meshdata: meshdata

In GuangchuangYu/meshes: MeSH Enrichment and Semantic analyses

meshdata

Description

construct annoData for semantic measurement

Usage

meshdata(MeSHDb = NULL, database, category, computeIC = FALSE)

Arguments

MeSHDb	MeSHDb package
database	one of supported database
category	one of supported category
computeIC	logical value

Value

a GOSemSimDATA object

Author(s)

Guangchuang Yu

Examples

## Not run: 
library(meshes)
library(AnnotationHub)
ah <- AnnotationHub()
qr_hsa <- query(ah, c("MeSHDb", "Homo sapiens"))
filepath_hsa <- qr_hsa[[1]]
db <- MeSHDbi::MeSHDb(filepath_hsa)
hsamd <- meshdata(db, category='A', computeIC=T, database="gendoo")

## End(Not run)

GuangchuangYu/meshes documentation built on Oct. 31, 2024, 10:12 a.m.