Man pages for HAN-Siyu/ncProR
Predicting Long non-coding RNA-Protein Interaction
| computeFreq | Computation of the K-Mer Frequencies of RNA or Protein... |
| computeMLC | Computation of the most-like CDS region of an RNA sequence |
| computeMotifs | Counting the Number of Motifs in RNA or Protein Sequences |
| computePhysChem | Computation of the Physicochemical Features of RNA or Protein... |
| computePhysChem_AAindex | Computation of the AAindex-Based Physicochemical Features of... |
| computeStructure | Computation of the Secondary Structural Features of RNA or... |
| demoIDX | A demo of sequence indices |
| demoNegativeSeq | A demo of negative pairs |
| demoPositiveSeq | A demo of positive pairs |
| evaluatePrediction | Evaluate Predicted Result |
| featureFreq | Extraction of the _K_-Mer Features of RNA and Protein... |
| featureMotifs | Extraction of the Motif Features of RNA and Protein Sequences |
| featurePhysChem | Extraction of the Physicochemical Features of RNA and Protein... |
| featureStructure | Extraction of the Secondary Structural Features of RNA and... |
| formatSeq | Format RNA/Protein Sequences According to the Index |
| mod_LION | Retrained random forest classifier of LION method |
| mod_LncADeep | Retrained classifier of LncADeep method |
| mod_lncPro | Retrained random forest classifier of lncPro method |
| mod_rpiCOOL | Retrained random forest classifier of rpiCOOL method |
| mod_RPISeq | Retrained random forest classifier of RPISeq method |
| normalizeData | Normalize Data |
| randomForest_CV | Evaluation of Random Forest Classifier with K-Fold Cross... |
| randomForest_RFE | Feature Selection Using Random Forest Classifier and... |
| randomForest_tune | Determine mtry for Random Forest Classifier Using K-Fold... |
| run_confidentPrediction | Confident Prediction of RNA-Protein Interaction Using... |
| run_LION | Predict RNA-Protein Interaction Using LION Method |
| run_LncADeep | Predict RNA-Protein Interaction Using LncADeep's Features |
| run_lncPro | Predict RNA-Protein Interaction Using lncPro Method |
| runPredator | Run Predator in R |
| runRNAsubopt | Run RNAsubopt in R |
| run_rpiCOOL | Predict RNA-Protein Interaction Using rpiCOOL's Features |
| run_RPISeq | Predict RNA-Protein Interaction Using RPISeq Method |
