HERU-LEM/LEMHIVpack
Localized Economic HIV Model

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Files in HERU-LEM/LEMHIVpack
Localized Economic HIV Model

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.gitignore
01_Setup/CascadeCEA-Combination-0-Setup-combination.list.R 01_Setup/CascadeCEA-Interventions-1-LoadBaselineWorkspace.R 01_Setup/CascadeCEA-Interventions-1-LoadFunctions.R 01_Setup/CascadeCEA-Interventions-1-LoadParameterWorkspace-Combination.R 01_Setup/CascadeCEA-Interventions-1-LoadSecondaryFunctions.R 01_Setup/CascadeCEA-Interventions-1-ParNamesExportIntModel.R 01_Setup/CascadeCEA-Model-0-Group.number.R 01_Setup/CascadeCEA-Model-0-Parameter.update.R 01_Setup/CascadeCEA-Model-0-Parameterization.R 01_Setup/CascadeCEA-Model-1-Module-Data.input.R 02_Run_model/CascadeCEA-Interventions-2-RunModelAndAccum-Combination-DMnPSA-OCIS-ideal.R 02_Run_model/CascadeCEA-Interventions-2-RunModelAndAccum-Combination-Deterministic.R 02_Run_model/CascadeCEA-Interventions-2-RunModelAndAccum-Combination-PSA-Comparator.R 02_Run_model/CascadeCEA-Interventions-2-RunModelAndAccum-Combination-PSA-OCIS.R 02_Run_model/CascadeCEA-Interventions-2-RunModelAndAccum-Combination-PSA-Proximal.R 02_Run_model/CascadeCEA-Interventions-2-RunModelAndAccum-SingleIntervention-Deterministic.R 02_Run_model/CascadeCEA-Interventions-2-RunModelAndAccum-SingleIntervention-PSA.R 03_Analysis/CascadeCEA-Interventions-3-Analysis-CEATable(range).R 03_Analysis/CascadeCEA-Interventions-3-Analysis-CostBreakdown.R 03_Analysis/CascadeCEA-Interventions-3-Analysis-DetermineProximalStrategies.R 03_Analysis/CascadeCEA-Interventions-3-Analysis-IncidenceDataPreparation.R 03_Analysis/CascadeCEA-Interventions-3-Analysis-PSA-ProportionMostCE.R 03_Analysis/CascadeCEA-Interventions-3-Analysis-ProductionFunction.R 03_Analysis/CascadeCEA-Interventions-3-Plot-Ellipse(PSA).R 03_Analysis/CascadeCEA-Interventions-3-Plot-NewIncidence.R 03_Analysis/CascadeCEA-Interventions-3-Plot-ProductionFunction.R
Combination/.Rhistory
Combination/Combination.list.rds
Combination/Ideal/Outcome-OCIS-ATL-PSA-22408-ideal.rds
Combination/Ideal/Outcome-OCIS-BAL-PSA-22926-ideal.rds
Combination/Ideal/Outcome-OCIS-LA-PSA-23023-ideal.rds
Combination/Ideal/Outcome-OCIS-MIA-PSA-23039-ideal.rds
Combination/Ideal/Outcome-OCIS-NYC-PSA-22905-ideal.rds
Combination/Ideal/Outcome-OCIS-SEA-PSA-21073-ideal.rds
Combination/Ideal/Outcome-refvsOCIS-ATL-ideal.rds
Combination/Ideal/Outcome-refvsOCIS-BAL-ideal.rds
Combination/Ideal/Outcome-refvsOCIS-LA-ideal.rds
Combination/Ideal/Outcome-refvsOCIS-MIA-ideal.rds
Combination/Ideal/Outcome-refvsOCIS-NYC-ideal.rds
Combination/Ideal/Outcome-refvsOCIS-SEA-ideal.rds
Combination/Outcome-All-Combination-ATL-DM.rds
Combination/Outcome-All-Combination-BAL-DM.rds
Combination/Outcome-All-Combination-LA-DM.rds
Combination/Outcome-All-Combination-MIA-DM.rds
Combination/Outcome-All-Combination-NYC-DM.rds
Combination/Outcome-All-Combination-SEA-DM.rds
Combination/Outcome-Combination-ATL-PSA-12779(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-12798(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-12800(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-13122(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-17609(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-17611(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-17626(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-17942(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-20881(Comparator).rds
Combination/Outcome-Combination-ATL-PSA-22408(OCIS).rds
Combination/Outcome-Combination-ATL-PSA-22497(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-22906(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-22918(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-22920(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-22933(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-22950(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-22952(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-23024(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-23026(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-23029(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-23031(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-23033(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-7619(Proximal).rds
Combination/Outcome-Combination-ATL-PSA-7830(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-20816(Comparator).rds
Combination/Outcome-Combination-BAL-PSA-20876(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-21058(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-21088(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-21094(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22403(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22407(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22433(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22439(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22502(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22511(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22517(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22524(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22527(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22911(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22920(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22926(OCIS).rds
Combination/Outcome-Combination-BAL-PSA-22927(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22933(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22936(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22937(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22942(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22952(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22953(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22955(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-22957(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-23027(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-23029(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-23030(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-23031(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-23033(Proximal).rds
Combination/Outcome-Combination-BAL-PSA-23039(Proximal).rds
Combination/Outcome-Combination-LA-PSA-20855(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22382(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22418(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22430(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22496(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22508(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22511(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22521(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22905(Comparator).rds
Combination/Outcome-Combination-LA-PSA-22905(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22917(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22920(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22930(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22933(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22949(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22952(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22955(Proximal).rds
Combination/Outcome-Combination-LA-PSA-22957(Proximal).rds
Combination/Outcome-Combination-LA-PSA-23023(OCIS).rds
Combination/Outcome-Combination-LA-PSA-23023(Proximal).rds
Combination/Outcome-Combination-LA-PSA-23026(Proximal).rds
Combination/Outcome-Combination-LA-PSA-23029(Proximal).rds
Combination/Outcome-Combination-LA-PSA-23031(Proximal).rds
Combination/Outcome-Combination-LA-PSA-23033(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22497(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22524(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22906(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22920(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22931(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22933(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22936(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22950(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22952(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22955(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-22957(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-23024(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-23026(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-23029(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-23030(Comparator).rds
Combination/Outcome-Combination-MIA-PSA-23031(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-23033(Proximal).rds
Combination/Outcome-Combination-MIA-PSA-23039(OCIS).rds
Combination/Outcome-Combination-NYC-PSA-21037(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-21073(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22382(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22397(Comparator).rds
Combination/Outcome-Combination-NYC-PSA-22418(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22496(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22508(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22521(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22905(OCIS).rds
Combination/Outcome-Combination-NYC-PSA-22917(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22930(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-22949(Proximal).rds
Combination/Outcome-Combination-NYC-PSA-23023(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-17900(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-17916(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-17931(Comparator).rds
Combination/Outcome-Combination-SEA-PSA-20839(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-20855(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-20968(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-21037(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-21052(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-21073(OCIS).rds
Combination/Outcome-Combination-SEA-PSA-21073(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-21085(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22366(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22382(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22418(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22430(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22453(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22496(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22508(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22521(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22905(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-22917(Proximal).rds
Combination/Outcome-Combination-SEA-PSA-23023(Proximal).rds
Combination/PSA-ProximalStrategies-ATL.rds
Combination/PSA-ProximalStrategies-BAL.rds
Combination/PSA-ProximalStrategies-LA.rds
Combination/PSA-ProximalStrategies-MIA.rds
Combination/PSA-ProximalStrategies-NYC.rds
Combination/PSA-ProximalStrategies-SEA.rds
Combination/ProductionFunction-Frontier-ATL.rds
Combination/ProductionFunction-Frontier-BAL.rds
Combination/ProductionFunction-Frontier-LA.rds
Combination/ProductionFunction-Frontier-MIA.rds
Combination/ProductionFunction-Frontier-NYC.rds
Combination/ProductionFunction-Frontier-SEA.rds
Combination/combination-index-list_new.rds
DESCRIPTION
Data Files/CascadeCEA-Pop-Initials.rds
Data Files/Evidence-Inputs-Master.xlsx
Data Files/Ideal/Evidence-Inputs-Master-Ideal.xlsx
Data Files/LEMmodel-UpdatedPrEPdata2020.csv
Data Files/PopProjections.xlsx
Data Files/Target.xlsx
Data Files/cali_par_all.xlsx
Inputs/AllParams-Combination-DM-ATL.rds
Inputs/AllParams-Combination-DM-BAL.rds
Inputs/AllParams-Combination-DM-LA.rds
Inputs/AllParams-Combination-DM-MIA.rds
Inputs/AllParams-Combination-DM-NYC.rds
Inputs/AllParams-Combination-DM-SEA.rds
Inputs/AllParams-Combination-SA-ATL.rds
Inputs/AllParams-Combination-SA-BAL.rds
Inputs/AllParams-Combination-SA-LA.rds
Inputs/AllParams-Combination-SA-MIA.rds
Inputs/AllParams-Combination-SA-NYC.rds
Inputs/AllParams-Combination-SA-SEA.rds
Inputs/Calib-Outputs-ATL.rds
Inputs/Calib-Outputs-BAL.rds
Inputs/Calib-Outputs-LA.rds
Inputs/Calib-Outputs-MIA.rds
Inputs/Calib-Outputs-NYC.rds
Inputs/Calib-Outputs-SEA.rds
Inputs/Combination-DM-ATL-refcase-infections.rds
Inputs/Combination-DM-ATL-refcase-outcomes.rds
Inputs/Combination-DM-ATL-refcase.rds
Inputs/Combination-DM-BAL-refcase-infections.rds
Inputs/Combination-DM-BAL-refcase-outcomes.rds
Inputs/Combination-DM-BAL-refcase.rds
Inputs/Combination-DM-LA-refcase-infections.rds
Inputs/Combination-DM-LA-refcase-outcomes.rds
Inputs/Combination-DM-LA-refcase.rds
Inputs/Combination-DM-MIA-refcase-infections.rds
Inputs/Combination-DM-MIA-refcase-outcomes.rds
Inputs/Combination-DM-MIA-refcase.rds
Inputs/Combination-DM-NYC-refcase-infections.rds
Inputs/Combination-DM-NYC-refcase-outcomes.rds
Inputs/Combination-DM-NYC-refcase.rds
Inputs/Combination-DM-SEA-refcase-infections.rds
Inputs/Combination-DM-SEA-refcase-outcomes.rds
Inputs/Combination-DM-SEA-refcase.rds
Inputs/Combination-SA-ATL-refcase-infections.rds
Inputs/Combination-SA-ATL-refcase-outcomes.rds
Inputs/Combination-SA-BAL-refcase-infections.rds
Inputs/Combination-SA-BAL-refcase-outcomes.rds
Inputs/Combination-SA-LA-refcase-infections.rds
Inputs/Combination-SA-LA-refcase-outcomes.rds
Inputs/Combination-SA-MIA-refcase-infections.rds
Inputs/Combination-SA-MIA-refcase-outcomes.rds
Inputs/Combination-SA-NYC-refcase-infections.rds
Inputs/Combination-SA-NYC-refcase-outcomes.rds
Inputs/Combination-SA-SEA-refcase-infections.rds
Inputs/Combination-SA-SEA-refcase-outcomes.rds
LEMHIVpack.Rproj
LICENSE
NAMESPACE
Outputs/CEA Table/CEATable(range).csv
Outputs/CostBreakdown/CostBreakdown-ATL-Strategy-22408-documented.rds
Outputs/CostBreakdown/CostBreakdown-BAL-Strategy-22926-documented.rds
Outputs/CostBreakdown/CostBreakdown-LA-Strategy-23023-documented.rds
Outputs/CostBreakdown/CostBreakdown-MIA-Strategy-23039-documented.rds
Outputs/CostBreakdown/CostBreakdown-NYC-Strategy-22905-documented.rds
Outputs/CostBreakdown/CostBreakdown-SEA-Strategy-21073-documented.rds
Outputs/Incidence/AnnualIncidenceRate.csv
Outputs/Incidence/IncidenceReduction(documented).csv
Outputs/Incidence/IncidenceReduction(ideal).csv
Outputs/Incidence/incidence_ggplot_range.rds
Outputs/Mixing matrix/Mixing matrix.xlsx
Outputs/Mixing matrix/MixingMatrix-ATLFemale.csv
Outputs/Mixing matrix/MixingMatrix-ATLMSM.csv
Outputs/Mixing matrix/MixingMatrix-ATLMale.csv
Outputs/Mixing matrix/MixingMatrix-BALFemale.csv
Outputs/Mixing matrix/MixingMatrix-BALMSM.csv
Outputs/Mixing matrix/MixingMatrix-BALMale.csv
Outputs/Mixing matrix/MixingMatrix-LAFemale.csv
Outputs/Mixing matrix/MixingMatrix-LAMSM.csv
Outputs/Mixing matrix/MixingMatrix-LAMale.csv
Outputs/Mixing matrix/MixingMatrix-MIAFemale.csv
Outputs/Mixing matrix/MixingMatrix-MIAMSM.csv
Outputs/Mixing matrix/MixingMatrix-MIAMale.csv
Outputs/Mixing matrix/MixingMatrix-NYCFemale.csv
Outputs/Mixing matrix/MixingMatrix-NYCMSM.csv
Outputs/Mixing matrix/MixingMatrix-NYCMale.csv
Outputs/Mixing matrix/MixingMatrix-SEAFemale.csv
Outputs/Mixing matrix/MixingMatrix-SEAMSM.csv
Outputs/Mixing matrix/MixingMatrix-SEAMale.csv
Outputs/Production Function Table/Combination implementation strategies-Production Function.xlsx
Outputs/Production Function Table/ProductionFunction.CEAResults-ATL.xlsx
Outputs/Production Function Table/ProductionFunction.CEAResults-BAL.xlsx
Outputs/Production Function Table/ProductionFunction.CEAResults-LA.xlsx
Outputs/Production Function Table/ProductionFunction.CEAResults-MIA.xlsx
Outputs/Production Function Table/ProductionFunction.CEAResults-NYC.xlsx
Outputs/Production Function Table/ProductionFunction.CEAResults-SEA.xlsx
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewDiagnoses(MSM).csv
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewDiagnoses(MSM).rds
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewDiagnoses.csv
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewDiagnoses.rds
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewInc.csv
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewInc.rds
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewInc_decline.csv
Outputs/StatusQuo/CascadeCEA-StatusQuo-NewInc_decline.rds
R/CascadeCEA-Interventions-0-Function-accumulate.outcomes.combination.R R/CascadeCEA-Interventions-0-Function-comb.eva.func.R R/CascadeCEA-Interventions-0-Function-incidence.derivation.R R/CascadeCEA-Interventions-0-Function-intervention.model.combination.R R/CascadeCEA-Interventions-0-Function-scale.interventions.combination.R R/CascadeCEA-Interventions-0-Function-set.scale.race.gender.R R/CascadeCEA-Interventions-0-Function-set.scale.risk.race.gender.R R/CascadeCEA-Interventions-0-Function-time.period.infections.R R/CascadeCEA-Interventions-0-Function-true.false.interventions.combination.R R/CascadeCEA-Model-0-Function-FoI.R R/CascadeCEA-Model-0-Function-model.initial.R R/CascadeCEA-Model-0-Function-ode.list.OAT.R R/CascadeCEA-Model-0-Function-ode.list.R R/CascadeCEA-Model-0-Function-ode.list.offOAT.R R/CascadeCEA-Model-0-Function-ode_model-Combination.R README.Rmd
README.html
README.md
SingleIntervention/Outcome-Single-Intervention-ATL-DM.rds
SingleIntervention/Outcome-Single-Intervention-BAL-DM.rds
SingleIntervention/Outcome-Single-Intervention-LA-DM.rds
SingleIntervention/Outcome-Single-Intervention-MIA-DM.rds
SingleIntervention/Outcome-Single-Intervention-NYC-DM.rds
SingleIntervention/Outcome-Single-Intervention-SEA-DM.rds
docs/404.html
docs/LICENSE-text.html
docs/articles/aa-introduction.html
docs/articles/aa-introduction_files/header-attrs-2.3.3/header-attrs.js
docs/articles/aa-introduction_files/header-attrs-2.3/header-attrs.js
docs/articles/bb-model_inputs.html
docs/articles/bb-model_inputs_files/header-attrs-2.3.3/header-attrs.js
docs/articles/bb-model_inputs_files/header-attrs-2.3/header-attrs.js
docs/articles/cc-model_functions.html
docs/articles/cc-model_functions_files/header-attrs-2.3.3/header-attrs.js
docs/articles/cc-model_functions_files/header-attrs-2.3/header-attrs.js
docs/articles/dd-interventions.html
docs/articles/dd-interventions_files/header-attrs-2.3.3/header-attrs.js
docs/articles/dd-interventions_files/header-attrs-2.3/header-attrs.js
docs/articles/ee-run_model.html
docs/articles/ee-run_model_files/header-attrs-2.3.3/header-attrs.js
docs/articles/ee-run_model_files/header-attrs-2.3/header-attrs.js
docs/articles/ff-analysis.html
docs/articles/ff-analysis_files/header-attrs-2.3.3/header-attrs.js
docs/articles/ff-analysis_files/header-attrs-2.3/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/figs/01_model_diagram.png
docs/figs/02_model_strata.png
docs/figs/03_evidence_based_int.png
docs/figs/04_psa_ellipses.png
docs/figs/05_production_function.png
docs/figs/06_Incidence.jpg
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/FoI.html
docs/reference/accum.outcomes.combination.html
docs/reference/comb.eva.func.html
docs/reference/figures/logo.jpg
docs/reference/hello.html
docs/reference/incidence.derivation.html
docs/reference/index.html
docs/reference/intervention.model.combination.html
docs/reference/model.initial.html
docs/reference/ode.list.OAT.html
docs/reference/ode.list.html
docs/reference/ode.list.offOAT.html
docs/reference/ode_model.html
docs/reference/scale.interventions.combination.html
docs/reference/set.scale.race.gender.html
docs/reference/set.scale.risk.race.gender.html
docs/reference/time.period.infections.html
docs/reference/true.false.interventions.combination.html
figs/01_model_diagram.png
figs/02_model_strata.png
figs/03_evidence_based_int.png
figs/04_psa_ellipses.png
figs/05_production_function.png
figs/06_Incidence.jpg
figs/logo.jpg
man/FoI.Rd man/accum.outcomes.combination.Rd man/comb.eva.func.Rd
man/figures/logo.jpg
man/incidence.derivation.Rd man/intervention.model.combination.Rd man/model.initial.Rd man/ode.list.OAT.Rd man/ode.list.Rd man/ode.list.offOAT.Rd man/ode_model.Rd man/scale.interventions.combination.Rd man/set.scale.race.gender.Rd man/set.scale.risk.race.gender.Rd man/time.period.infections.Rd man/true.false.interventions.combination.Rd vignettes/aa-introduction.Rmd vignettes/bb-model_inputs.Rmd
vignettes/book.bib
vignettes/cc-model_functions.Rmd vignettes/dd-interventions.Rmd vignettes/ee-run_model.Rmd vignettes/ff-analysis.Rmd
vignettes/figs/01_model_diagram.png
vignettes/figs/02_model_strata.png
vignettes/figs/03_evidence_based_int.png
vignettes/figs/04_psa_ellipses.png
vignettes/figs/05_production_function.png
vignettes/figs/06_Incidence.jpg
vignettes/figs/logo.jpg
vignettes/packages.bib
HERU-LEM/LEMHIVpack documentation built on Sept. 9, 2020, 12:36 a.m.

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