Man pages for HVoltBb/kondonz
A Comprehensive Codon Analysis Toolbox
| arg_check | Arguments checks |
| augc_freq | Overall AT and GC content |
| base_freq | Overall nucleotides frequency |
| cai | Codon adaptation index |
| cai_crt | Custom CAI reference table |
| comp_ly | Composition analysis |
| dna2aa | Translating a codon sequence to into animo-acids |
| enc | Effective number of codons |
| enc_exp | Expected number of ENC given GC3 content |
| gc3 | Calculate GC3 value of a codon sequence |
| gcx | GCx of a list of genes |
| load.fasta | A function to load fasta files |
| n3_freq | Nucleotide at the third position of the codon |
| pminmax | %MinMax of a coding DNA sequence |
| rm_ndc | Remove non-degenerate and stop codons |
| rrt | Random reverse translation |
| rscu | Relative synonymous codon usage |
| scuo | Synonymous codon usage order |
