scuo: Synonymous codon usage order

Description Usage Arguments Value

View source: R/scuo.r

Description

Calculates the synonymous codon usage order of a codon sequence based on a codon table.

Usage

1
scuo(x, y = 0)

Arguments

x

a KZsqns object of codon sequence or a list of such objects

y

a number to assign the type of codon table to be used for the translation. 0 = standard codon table, 2 = vertibrate mitchodrial, . If no number is specified or an option other than those provided above is specified, there will be a warning and the standard codon table will be used

Value

a numeric array of synonymous codon usage order, or a list of such arrays if x is a list


HVoltBb/kondonz documentation built on Jan. 11, 2020, 3:30 a.m.