arg_check: Arguments checks

In HVoltBb/kondonz: A Comprehensive Codon Analysis Toolbox

Description

Performs the usual checks of arguments consistency of codon sequences and codon table to be used

Usage

arg_check(x, mode, y)

Arguments

x	a char array of codons
mode	a char array denoting the expected mode of the argument x
y	a number denoting the codon table to be used. 0 = standard codon table, 2 = vertibrate mitchodrial, 3 = yeast mitochondrial, 4 = mold, protozoan, and Coelenterate mitochondrial and Mycoplasma/Spiroplasma, 5 = invertebrate mitochandrial, 6 = Ciliate, Dasycladacean and Hexamita nuclear, 9 = Echinoderm and flatworm mitochondrial, 10 = Euplotid nuclear, 11 = bacterial, Archaeal and plant plastid, 12 = alternative yeast nuclear, 13 = Ascidian mitochondrial, 14 = alternative flatworm mitochondrial, 16 = Chlorophycean mitochondrial, 21 = Trematode mitochondrial, 22 = Scenedesmus obliquus mitochondrial, 23 = Thraustochytrium mitochondrial, 24 = Pterobranchia mitochondrial, 25 = candidate division SR1 and Gracilibacteria, 26 = Pachysolen tannophilus nuclear, 29 = Mesodinium nuclear, 30 = Peritrich nuclear.

Value

a numeric matrix of the appropriate codon table

HVoltBb/kondonz documentation built on Jan. 11, 2020, 3:30 a.m.