Files in HajkD/myTAI

Evolutionary Transcriptomics

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DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/CollapseReplicates.R R/DiffGenes.R R/EarlyConservationTest.R R/EnrichmentTest.R R/Expressed.R R/FlatLineTest.R R/GroupDiffs.R R/LateConservationTest.R R/MatchMap.R R/PlotBarRE.R R/PlotCIRatio.R R/PlotCategoryExpr.R R/PlotContribution.R R/PlotCorrelation.R R/PlotDistribution.R R/PlotEnrichment.R R/PlotGeneSet.R R/PlotGroupDiffs.R R/PlotMeans.R R/PlotMedians.R R/PlotPattern.R R/PlotRE.R R/PlotReplicateQuality.R R/PlotSelectedAgeDistr.R R/PlotSignature.R R/PlotSignatureTransformed.R R/PlotVars.R R/RcppExports.R R/ReductiveHourglassTest.R R/ReverseHourglassTest.R R/SelectGeneSet.R R/TAI.R R/TDI.R R/TEI.R R/TPI.R R/age.apply.R R/base.R R/bootMatrix.R R/bootTEI.R R/combinatorialSignificance.R R/cpp11.R R/custom.myTAI.cols.R R/datasets.R R/ecScore.R R/geom.mean.R R/harm.mean.R R/is.ExpressionSet.R R/lcScore.R R/myTAI-package.R R/omitMatrix.R R/pMatrix.R R/pMatrixTEI.R R/pStrata.R R/pStrataTEI.R R/pTAI.R R/pTDI.R R/rel_exp.R R/reversehourglassScore.R R/rhScore.R R/taxid.R R/taxonomy.R R/tf.R R/tfStability.R README.md cran-comments.md

data/DivergenceExpressionSetExample.rda

data/PhyloExpressionSetExample.rda

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man/CollapseReplicates.Rd man/CombinatorialSignificance.Rd man/DiffGenes.Rd man/DivergenceExpressionSetExample.Rd man/EarlyConservationTest.Rd man/EnrichmentTest.Rd man/Expressed.Rd man/FlatLineTest.Rd man/GroupDiffs.Rd man/LateConservationTest.Rd man/MatchMap.Rd man/PhyloExpressionSetExample.Rd man/PlotBarRE.Rd man/PlotCIRatio.Rd man/PlotCategoryExpr.Rd man/PlotContribution.Rd man/PlotCorrelation.Rd man/PlotDistribution.Rd man/PlotEnrichment.Rd man/PlotGeneSet.Rd man/PlotGroupDiffs.Rd man/PlotMeans.Rd man/PlotMedians.Rd man/PlotPattern.Rd man/PlotRE.Rd man/PlotReplicateQuality.Rd man/PlotSelectedAgeDistr.Rd man/PlotSignature.Rd man/PlotSignatureTransformed.Rd man/PlotVars.Rd man/RE.Rd man/REMatrix.Rd man/ReductiveHourglassTest.Rd man/ReverseHourglassTest.Rd man/SelectGeneSet.Rd man/TAI.Rd man/TDI.Rd man/TEI.Rd man/TPI.Rd man/age.apply.Rd man/bar.colors.Rd man/bootMatrix.Rd man/bootTEI.Rd man/ecScore.Rd

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man/geom.mean.Rd man/harm.mean.Rd man/is.ExpressionSet.Rd man/lcScore.Rd man/omitMatrix.Rd man/pMatrix.Rd man/pMatrixTEI.Rd man/pStrata.Rd man/pStrataTEI.Rd man/pTAI.Rd man/pTDI.Rd man/rcpp_boottei_parallel.Rd man/rcpp_pMatrix_parallel.Rd man/rcpp_pStrata_parallel.Rd man/rcpp_tei_parallel.Rd man/reversehourglassScore.Rd man/rhScore.Rd man/taxid.Rd man/taxonomy.Rd man/tf.Rd man/tfStability.Rd

myTAI.Rproj

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src/.Rapp.history

src/Makevars

src/RcppExports.cpp

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tests/testthat.R tests/testthat/test-CollapseReplicates.R tests/testthat/test-CombinatorialSignificance.R tests/testthat/test-DiffGenes.R tests/testthat/test-EarlyConservationTest.R tests/testthat/test-Expressed.R tests/testthat/test-FlatLineTest.R tests/testthat/test-LateConservationTest.R tests/testthat/test-MatchMap.R tests/testthat/test-PlotBarRE.R tests/testthat/test-PlotContribution.R tests/testthat/test-PlotCorrelation.R tests/testthat/test-PlotDistribution.R tests/testthat/test-PlotEnrichment.R tests/testthat/test-PlotGeneSet.R tests/testthat/test-PlotMeans.R tests/testthat/test-PlotPattern.R tests/testthat/test-PlotRE.R tests/testthat/test-RE.R tests/testthat/test-REMatrix.R tests/testthat/test-ReductiveHourglassTest.R tests/testthat/test-TAI.R tests/testthat/test-TDI.R tests/testthat/test-age.apply.R tests/testthat/test-bootMatrix.R tests/testthat/test-ecScore.R tests/testthat/test-geom.mean.R tests/testthat/test-harm.mean.R tests/testthat/test-lcScore.R tests/testthat/test-omitMatrix.R tests/testthat/test-pMatrix.R tests/testthat/test-pStrata.R tests/testthat/test-pTAI.R tests/testthat/test-pTDI.R tests/testthat/test-rhScore.R tests/testthat/test-taxonomy.R tests/testthat/test-tf.R tests/testthat/test-tfStability.R vignettes/Advanced.R vignettes/Advanced.Rmd

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vignettes/Enrichment.R vignettes/Enrichment.Rmd

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vignettes/Expression.R vignettes/Expression.Rmd

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vignettes/Intermediate.R vignettes/Intermediate.Rmd

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vignettes/Introduction.R vignettes/Introduction.Rmd

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vignettes/Phylostratigraphy.R vignettes/Phylostratigraphy.Rmd

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vignettes/Taxonomy.R vignettes/Taxonomy.Rmd

vignettes/Taxonomy.html

HajkD/myTAI documentation built on April 6, 2024, 7:47 p.m.