Files in HajkD/myTAI
Evolutionary Transcriptomics

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/CollapseReplicates.R R/DiffGenes.R R/EarlyConservationTest.R R/EnrichmentTest.R R/Expressed.R R/FlatLineTest.R R/GroupDiffs.R R/MatchMap.R R/PlotBarRE.R R/PlotCIRatio.R R/PlotCategoryExpr.R R/PlotContribution.R R/PlotCorrelation.R R/PlotDistribution.R R/PlotEnrichment.R R/PlotGeneSet.R R/PlotGroupDiffs.R R/PlotMeans.R R/PlotMedians.R R/PlotPattern.R R/PlotRE.R R/PlotReplicateQuality.R R/PlotSelectedAgeDistr.R R/PlotSignature.R R/PlotVars.R R/RcppExports.R R/ReductiveHourglassTest.R R/ReverseHourglassTest.R R/SelectGeneSet.R R/TAI.R R/TDI.R R/TPI.R R/age.apply.R R/base.R R/bootMatrix.R R/combinatorialSignificance.R R/custom.myTAI.cols.R R/datasets.R R/ecScore.R R/geom.mean.R R/harm.mean.R R/is.ExpressionSet.R R/omitMatrix.R R/pMatrix.R R/pStrata.R R/pTAI.R R/pTDI.R R/rel_exp.R R/reversehourglassScore.R R/rhScore.R R/taxid.R R/taxonomy.R R/tf.R README.md cran-comments.md
data/DivergenceExpressionSetExample.rda
data/PhyloExpressionSetExample.rda
docs/articles/.DS_Store
docs/articles/Advanced.html
docs/articles/Enrichment.html
docs/articles/Expression.html
docs/articles/Figures/Fig1.png
docs/articles/Figures/Fig2.png
docs/articles/Figures/Fig3.png
docs/articles/Figures/Fig4.png
docs/articles/Intermediate.html
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docs/articles/Introduction.html
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docs/articles/Introduction_files/figure-html/unnamed-chunk-14-1.png
docs/articles/Taxonomy.html
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CollapseReplicates.html
docs/reference/CombinatorialSignificance.html
docs/reference/DiffGenes.html
docs/reference/DivergenceExpressionSetExample.html
docs/reference/EarlyConservationTest.html
docs/reference/EnrichmentTest.html
docs/reference/Expressed.html
docs/reference/FlatLineTest.html
docs/reference/GroupDiffs.html
docs/reference/MatchMap.html
docs/reference/PhyloExpressionSetExample.html
docs/reference/PlotBarRE-1.png
docs/reference/PlotBarRE-2.png
docs/reference/PlotBarRE-3.png
docs/reference/PlotBarRE-4.png
docs/reference/PlotBarRE.html
docs/reference/PlotCIRatio-1.png
docs/reference/PlotCIRatio.html
docs/reference/PlotCategoryExpr.html
docs/reference/PlotContribution-1.png
docs/reference/PlotContribution-2.png
docs/reference/PlotContribution.html
docs/reference/PlotCorrelation-1.png
docs/reference/PlotCorrelation.html
docs/reference/PlotDistribution-1.png
docs/reference/PlotDistribution-2.png
docs/reference/PlotDistribution-3.png
docs/reference/PlotDistribution.html
docs/reference/PlotEnrichment-1.png
docs/reference/PlotEnrichment-2.png
docs/reference/PlotEnrichment-3.png
docs/reference/PlotEnrichment-4.png
docs/reference/PlotEnrichment.html
docs/reference/PlotGeneSet-1.png
docs/reference/PlotGeneSet.html
docs/reference/PlotGroupDiffs-1.png
docs/reference/PlotGroupDiffs.html
docs/reference/PlotMeans-1.png
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docs/reference/PlotMeans-3.png
docs/reference/PlotMeans.html
docs/reference/PlotMedians-1.png
docs/reference/PlotMedians-2.png
docs/reference/PlotMedians-3.png
docs/reference/PlotMedians.html
docs/reference/PlotPattern-1.png
docs/reference/PlotPattern-2.png
docs/reference/PlotPattern-3.png
docs/reference/PlotPattern-4.png
docs/reference/PlotPattern-5.png
docs/reference/PlotPattern.html
docs/reference/PlotRE-1.png
docs/reference/PlotRE-2.png
docs/reference/PlotRE-3.png
docs/reference/PlotRE.html
docs/reference/PlotReplicateQuality-1.png
docs/reference/PlotReplicateQuality.html
docs/reference/PlotSelectedAgeDistr-1.png
docs/reference/PlotSelectedAgeDistr-2.png
docs/reference/PlotSelectedAgeDistr.html
docs/reference/PlotSignature-1.png
docs/reference/PlotSignature-2.png
docs/reference/PlotSignature.html
docs/reference/PlotVars-1.png
docs/reference/PlotVars-2.png
docs/reference/PlotVars-3.png
docs/reference/PlotVars.html
docs/reference/RE.html
docs/reference/REMatrix.html
docs/reference/ReductiveHourglassTest.html
docs/reference/ReverseHourglassTest.html
docs/reference/SelectGeneSet.html
docs/reference/TAI.html
docs/reference/TDI.html
docs/reference/TPI.html
docs/reference/age.apply.html
docs/reference/bar.colors.html
docs/reference/bootMatrix.html
docs/reference/ecScore.html
docs/reference/geom.mean.html
docs/reference/harm.mean.html
docs/reference/index.html
docs/reference/is.ExpressionSet.html
docs/reference/omitMatrix.html
docs/reference/pMatrix-1.png
docs/reference/pMatrix-2.png
docs/reference/pMatrix.html
docs/reference/pStrata.html
docs/reference/pTAI.html
docs/reference/pTDI.html
docs/reference/reversehourglassScore.html
docs/reference/rhScore.html
docs/reference/taxid.html
docs/reference/taxonomy.html
docs/reference/tf-1.png
docs/reference/tf.html
inst/CITATION
inst/myTAI.png
man/CollapseReplicates.Rd man/DiffGenes.Rd man/DivergenceExpressionSetExample.Rd man/EarlyConservationTest.Rd man/EnrichmentTest.Rd man/Expressed.Rd man/FlatLineTest.Rd man/GroupDiffs.Rd man/MatchMap.Rd man/PhyloExpressionSetExample.Rd man/PlotBarRE.Rd man/PlotCIRatio.Rd man/PlotCategoryExpr.Rd man/PlotContribution.Rd man/PlotCorrelation.Rd man/PlotDistribution.Rd man/PlotEnrichment.Rd man/PlotGeneSet.Rd man/PlotGroupDiffs.Rd man/PlotMeans.Rd man/PlotMedians.Rd man/PlotPattern.Rd man/PlotRE.Rd man/PlotReplicateQuality.Rd man/PlotSelectedAgeDistr.Rd man/PlotSignature.Rd man/PlotVars.Rd man/RE.Rd man/REMatrix.Rd man/ReductiveHourglassTest.Rd man/ReverseHourglassTest.Rd man/SelectGeneSet.Rd man/TAI.Rd man/TDI.Rd man/TPI.Rd man/age.apply.Rd man/bar.colors.Rd man/bootMatrix.Rd man/combinatorialSignificance.Rd man/ecScore.Rd man/geom.mean.Rd man/harm.mean.Rd man/is.ExpressionSet.Rd man/omitMatrix.Rd man/pMatrix.Rd man/pStrata.Rd man/pTAI.Rd man/pTDI.Rd man/reversehourglassScore.Rd man/rhScore.Rd man/taxid.Rd man/taxonomy.Rd man/tf.Rd
src/Makevars
src/RcppExports.cpp
src/myTAI_init.c
src/rcpp_funcs.cpp
tests/testthat.R tests/testthat/test-CollapseReplicates.R tests/testthat/test-CombinatorialSignificance.R tests/testthat/test-DiffGenes.R tests/testthat/test-EarlyConservationTest.R tests/testthat/test-Expressed.R tests/testthat/test-FlatLineTest.R tests/testthat/test-MatchMap.R tests/testthat/test-PlotBarRE.R tests/testthat/test-PlotContribution.R tests/testthat/test-PlotCorrelation.R tests/testthat/test-PlotDistribution.R tests/testthat/test-PlotEnrichment.R tests/testthat/test-PlotGeneSet.R tests/testthat/test-PlotMeans.R tests/testthat/test-PlotPattern.R tests/testthat/test-PlotRE.R tests/testthat/test-RE.R tests/testthat/test-REMatrix.R tests/testthat/test-ReductiveHourglassTest.R tests/testthat/test-TAI.R tests/testthat/test-TDI.R tests/testthat/test-age.apply.R tests/testthat/test-bootMatrix.R tests/testthat/test-ecScore.R tests/testthat/test-geom.mean.R tests/testthat/test-harm.mean.R tests/testthat/test-omitMatrix.R tests/testthat/test-pMatrix.R tests/testthat/test-pStrata.R tests/testthat/test-pTAI.R tests/testthat/test-pTDI.R tests/testthat/test-rhScore.R tests/testthat/test-taxid.R tests/testthat/test-taxonomy.R tests/testthat/test-tf.R vignettes/Advanced.Rmd vignettes/Enrichment.Rmd vignettes/Expression.Rmd
vignettes/Figures/Fig1.png
vignettes/Figures/Fig2.png
vignettes/Figures/Fig3.png
vignettes/Figures/Fig4.png
vignettes/Intermediate.Rmd vignettes/Introduction.Rmd vignettes/Taxonomy.Rmd
HajkD/myTAI documentation built on April 17, 2019, 7:29 p.m.