Description Usage Arguments Value Author(s) Examples
This function allows to visualize selected properties of input genomes such as:
gene length distribution: stats_type
= "length_distr"
1 |
data |
a file path to a |
seq_type |
sequence type stored in the
|
stats_type |
a character string specifying the genome feature that shall be visualized: "length_distr", ... . |
... |
additional parameters that shall be passed to the corresponding plot function. |
a plot object.
Hajk-Georg Drost
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | ## Not run:
# download the proteome of Arabidopsis thaliana from refseq
# and store the corresponding proteome file in '_ncbi_downloads/proteomes'
# install.packages("biomartr")
Ath_proteome <- biomartr::getProteome( db = "refseq",
organism = "Arabidopsis thaliana" )
# visualize the length distribution of the proteome of A. thaliana
visGenome(data = Ath_proteome,
seq_type = "protein",
stats_type = "length_distr",
main = "Histogram of A. thaliana protein sequence lengths",
xlab = "Sequence Length",
breaks = 100)
## End(Not run)
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