geneSequence: Retrieve Biological Sequences of a given Set of Genes

In HajkD/seqstats: A Statistical Analysis Package for Biological Sequences

Description

This function takes an character vector storing gene ids of interest and returns the biological sequence of the corresponding gene ids.

Usage

geneSequence(genes, db)

Arguments

genes	a character vector storing the gene id of a organisms of interest to be queried against the acnucdb database.
db	a character string specifying the database from which the sequence shall be retrieved.

Details

Sequence information is retrieved from the acnucdb database.

Value

A list of sequences for each corresponding input gene stored as string.

Author(s)

Hajk-Georg Drost

Examples

## Not run: 
# retrieve amino acid sequences from the 'swissprot' database 
# for gene ids:"AT1G06090" = "Q9LND9" and "AT1G06100" = "Q9LND8"
seqs <- geneSequence(c("Q9LND9","Q9LND8"), db = "swissprot")
  
# choose different databases available
seqinr::choosebank()

## End(Not run)

HajkD/seqstats documentation built on April 26, 2020, 8:03 p.m.