nj: Neighbor-joining

In HangRuan1912/phyExp: the R package for analyzing expression evolution based on RNA-seq data

Description

The famous neighbor-joining tree estimation function from Saitou and Nei (1987).

Usage

NJ(x)

Examples

data(tetraexp)
dismat <- expdist(tetraexp.objects, taxa = "all",
                 subtaxa = "Brain",
                 method = "pea")
tr <- root(NJ(dismat), "Chicken_Brain")
plot(tr)

HangRuan1912/phyExp documentation built on July 15, 2019, 9:01 p.m.