alignSets | Aligng datasets with procrustes analyses |
analyseCorrelation | Order results based on highest correlation |
checkParams | Check optional dimensionaloty reduction method parameters |
commaList2vector | Comma-separated string to numeric vector. |
compareSets | Compare dimensionality reduction across subsets |
computeDimReduction | Compute dimensionality reduction |
correlateSets | Column-wise correlation of two datasets |
corrPass | Filter correlations based on sequence of thresholds |
drStable | drStable |
estimateStability | Estimate stability |
findIntersect | Find intersecting samples between two sets and order... |
formatComparison | Format the comparison results |
invnorm | Inverse normalise |
medianCorr | Compute median correlation of low-dimensional components... |
methodsDimReduction | Wrapper function for dimensionality reduction methods |
prepInput | Prepare input files |
resultsComparison | Apply compareSetup and format results |
rmnulls | Remove nulls from nested list |
runCreateSubsets | Command line execution for Dimensionality reduction |
runDimensionalityReduction | Command line execution for Dimensionality reduction |
runEstimateStability | Command line execution for Stability |
saveDimReduction | Save results of dimensionality reduction |
ss | Sum of squares |
subsetDimReduction | Compute dimensionality reduction for subsets of the input... |
vmessage | Print userinfo. |
wrapDR | Wrap dimensionality reduction functions |
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