runCreateSubsets: Command line execution for Dimensionality reduction

In HannahVMeyer/drStable: Estimating the stability of dimensionality reduction results

Description

runCreateSubsets runs without arguments. Upon call, it reads command-line parameters pointing to the [highdim] file for which sample subsets should be created. [nrCV] subsets of the [highdim] data of size [sizeCV] are generated by random sampling of the row indeces (sampling seed can be specified via [seed]). The subsets will be saved in the same directory as the [highdim]_cv1.csv, ..., [highdim]_cv[nrCV].csv. For help on the command line arguments that can be passed, see examples below. From the command line, the help function can be called via Rscript -e "Stability::runCreateSubsets()" –args –help

Usage

runCreateSubsets()

Examples

# (not run)
# Rscript -e "Stability::runDimensionalityReduction()" \
#--args \
#--highdim=/path/to/highdimfile \
#--cov=/path/to/optional/covariatefile \
#--seed=234 \
#--nrCV=10 \
#--sizeCV=0.8 \
#--showProgress \

HannahVMeyer/drStable documentation built on Jan. 29, 2021, 11:42 a.m.