plot_profile_strands: Plots DNase or ATAC profiles by strands of motif matches

In HarteminkLab/TOP: Predict transcription factor occupancy using DNase- or ATAC-seq data

Plots DNase or ATAC profiles by strands of motif matches

Description

Plots DNase or ATAC profiles by strands of motif matches

Usage

plot_profile_strands(
  cuts,
  sites,
  mlen = ncol(cuts)/2 - 200,
  title = "",
  strand = c("both", "+", "-")
)

Arguments

cuts	Matrix of DNase or ATAC cuts
sites	Data frame of candidate sites
mlen	Motif length
title	Title of the plot

Examples

## Not run: 
plot_profile_strands(cuts, sites, title='Footprint profiles around binding sites')

## End(Not run)

HarteminkLab/TOP documentation built on July 27, 2023, 6:14 p.m.