extract_tf_cell_combos: Creates a table listing the indices and names of TF and cell...

In HarteminkLab/TOP: Predict transcription factor occupancy using DNase- or ATAC-seq data

Creates a table listing the indices and names of TF and cell type combinations from the assembled training data

Description

Creates a table listing the indices and names of TF x cell type combinations from the assembled training data. This will be used to extract regression coefficients from the TOP fit result.

Usage

extract_tf_cell_combos(assembled_training_data)

Arguments

assembled_training_data

Assembled training data obtained from the assemble_training_data() function.

Value

A data frame of the indices and names of TF x cell type combinations.

Examples

## Not run: 
tf_cell_combos <- extract_tf_cell_combos(assembled_training_data)

## End(Not run)

HarteminkLab/TOP documentation built on July 27, 2023, 6:14 p.m.