FS: Plot FisherStrand (FS)
In Hatoonli/vcfqc: What the Package Does (One Line, Title Case)
FS R Documentation
Plot FisherStrand (FS)
Description
This is the Phred-scaled probability that there is strand bias at the site. Strand Bias tells us whether the alternate allele was seen more or less often on the forward or reverse strand than the reference allele. When there little to no strand bias at the site, the FS value will be close to 0
Usage
FS(f, n)
Arguments
f
VCF input file
n
Threshold value (optional), default is the recommended GATK value.
Value
A plot of QD score and frequency
with table summary
and number of variants falling outside the threshold
Hatoonli/vcfqc documentation built on May 16, 2022, 12:19 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| FS | R Documentation |
Plot FisherStrand (FS)
Description
This is the Phred-scaled probability that there is strand bias at the site. Strand Bias tells us whether the alternate allele was seen more or less often on the forward or reverse strand than the reference allele. When there little to no strand bias at the site, the FS value will be close to 0
Usage
FS(f, n)
Arguments
f |
VCF input file |
n |
Threshold value (optional), default is the recommended GATK value. |
Value
A plot of QD score and frequency with table summary and number of variants falling outside the threshold
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.