SOR: Plot StrandOddsRAtio (SOR)
In Hatoonli/vcfqc: What the Package Does (One Line, Title Case)
SOR R Documentation
Plot StrandOddsRAtio (SOR)
Description
This is another way to estimate strand bias using a test similar to the symmetric odds ratio test. SOR was created because FS tends to penalize variants that occur at the ends of exons. Reads at the ends of exons tend to only be covered by reads in one direction and FS gives those variants a bad score. SOR will take into account the ratios of reads that cover both alleles.
Usage
SOR(f, n)
Arguments
f
file
n
threshold
Value
A plot of SOR score and frequency
with table summary
and number of variants falling outside the threshold
Hatoonli/vcfqc documentation built on May 16, 2022, 12:19 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| SOR | R Documentation |
Plot StrandOddsRAtio (SOR)
Description
This is another way to estimate strand bias using a test similar to the symmetric odds ratio test. SOR was created because FS tends to penalize variants that occur at the ends of exons. Reads at the ends of exons tend to only be covered by reads in one direction and FS gives those variants a bad score. SOR will take into account the ratios of reads that cover both alleles.
Usage
SOR(f, n)
Arguments
f |
file |
n |
threshold |
Value
A plot of SOR score and frequency with table summary and number of variants falling outside the threshold
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.