Helena-L/DropseqSimulator
Dropseq Simulator

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Helena-L/DropseqSimulator: Dropseq Simulator
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Files in Helena-L/DropseqSimulator
Dropseq Simulator

.Rbuildignore
.gitignore
3tx.fa
DESCRIPTION
NAMESPACE
R/calculate_sample_prob_naive.R R/calculate_sample_prob_polyA.R R/calculate_sample_prob_stat.R R/find_polyA_regions.R R/find_reverse_complement.R R/generate_barcodes.R R/generate_countmat.R R/simulate_dropseq_experiment.R R/simulate_dropseq_experiment_countmat.R R/simulator-package.R README.md
Simulator.Rproj
inst/extdata/model.Rda
inst/extdata/polyA_model.Rda
inst/extdata/summary_data_polyA_15.txt
inst/polyester/.Rbuildignore
inst/polyester/.gitignore
inst/polyester/.travis.yml
inst/polyester/DESCRIPTION
inst/polyester/ErrorModels.md
inst/polyester/NAMESPACE
inst/polyester/NEWS
inst/polyester/R/NB.R inst/polyester/R/add_error.R inst/polyester/R/add_gc_bias.R inst/polyester/R/add_platform_error.R inst/polyester/R/cdnaf.R inst/polyester/R/check_extras.R inst/polyester/R/count_transcripts.R inst/polyester/R/create_read_numbers.R inst/polyester/R/empirical_density.R inst/polyester/R/fpkm_to_counts.R inst/polyester/R/generate_fragments.R inst/polyester/R/getAttributeField.R inst/polyester/R/get_params.R inst/polyester/R/get_reads.R inst/polyester/R/gtf_dataframe.R inst/polyester/R/loessfit1.R inst/polyester/R/loessfit2.R inst/polyester/R/loessfit3.R inst/polyester/R/loessfit4.R inst/polyester/R/loessfit5.R inst/polyester/R/loessfit6.R inst/polyester/R/loessfit7.R inst/polyester/R/model1.R inst/polyester/R/model2.R inst/polyester/R/model3.R inst/polyester/R/model4.R inst/polyester/R/model5.R inst/polyester/R/model6.R inst/polyester/R/model7.R inst/polyester/R/polyester-package.R inst/polyester/R/reverse_complement.R inst/polyester/R/rnaf.R inst/polyester/R/seq_gtf.R inst/polyester/R/sgseq.R inst/polyester/R/simulate_experiment.R inst/polyester/R/simulate_experiment_countmat.R inst/polyester/R/simulate_experiment_empirical.R inst/polyester/R/write_reads.R inst/polyester/README.md
inst/polyester/build_error_models.py
inst/polyester/cdna_pos_bias.csv
inst/polyester/data/cdnaf.rda
inst/polyester/data/empirical_density.rda
inst/polyester/data/gtf_dataframe.rda
inst/polyester/data/ill100v4_mate1.rda
inst/polyester/data/ill100v4_mate2.rda
inst/polyester/data/ill100v4_single.rda
inst/polyester/data/ill100v5_mate1.rda
inst/polyester/data/ill100v5_mate2.rda
inst/polyester/data/ill100v5_single.rda
inst/polyester/data/loessfit1.rda
inst/polyester/data/loessfit2.rda
inst/polyester/data/loessfit3.rda
inst/polyester/data/loessfit4.rda
inst/polyester/data/loessfit5.rda
inst/polyester/data/loessfit6.rda
inst/polyester/data/loessfit7.rda
inst/polyester/data/rnaf.rda
inst/polyester/insert_sizes.sh
inst/polyester/inst/extdata/bg.gtf.gz
inst/polyester/inst/extdata/chr22.fa
inst/polyester/inst/extdata/toy.fa
inst/polyester/make_error_models.R inst/polyester/make_fraglen_model.R inst/polyester/make_gc_bias.R inst/polyester/make_positional_bias_model.R
inst/polyester/man/NB.Rd
inst/polyester/man/add_error.Rd
inst/polyester/man/add_gc_bias.Rd
inst/polyester/man/add_platform_error.Rd
inst/polyester/man/cdnaf.Rd
inst/polyester/man/count_transcripts.Rd
inst/polyester/man/create_read_numbers.Rd
inst/polyester/man/empirical_density.Rd
inst/polyester/man/fpkm_to_counts.Rd
inst/polyester/man/generate_fragments.Rd
inst/polyester/man/getAttributeField.Rd
inst/polyester/man/get_params.Rd
inst/polyester/man/get_reads.Rd
inst/polyester/man/gtf_dataframe.Rd
inst/polyester/man/loessfit1.Rd
inst/polyester/man/loessfit2.Rd
inst/polyester/man/loessfit3.Rd
inst/polyester/man/loessfit4.Rd
inst/polyester/man/loessfit5.Rd
inst/polyester/man/loessfit6.Rd
inst/polyester/man/loessfit7.Rd
inst/polyester/man/model1.Rd
inst/polyester/man/model2.Rd
inst/polyester/man/model3.Rd
inst/polyester/man/model4.Rd
inst/polyester/man/model5.Rd
inst/polyester/man/model6.Rd
inst/polyester/man/model7.Rd
inst/polyester/man/polyester.Rd
inst/polyester/man/reverse_complement.Rd
inst/polyester/man/rnaf.Rd
inst/polyester/man/seq_gtf.Rd
inst/polyester/man/simulate_experiment.Rd
inst/polyester/man/simulate_experiment_countmat.Rd
inst/polyester/man/simulate_experiment_empirical.Rd
inst/polyester/man/write_reads.Rd
inst/polyester/rnaf_pos_bias.csv
inst/polyester/vignettes/polyester.Rmd man/calculate_sample_prob_naive.Rd man/calculate_sample_prob_polyA.Rd man/calculate_sample_prob_stat.Rd man/find_polyA_regions.Rd man/find_reverse_complement.Rd man/generate_barcodes.Rd man/generate_countmat.Rd man/simulate_dropseq_experiment.Rd man/simulate_dropseq_experiment_countmat.Rd
model.Rda
Helena-L/DropseqSimulator documentation built on May 14, 2019, 9:37 a.m.

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