HelenaLC/muscat: Multi-sample multi-group scRNA-seq data analysis tools

`muscat` provides various methods and visualization tools for DS analysis in multi-sample, multi-group, multi-(cell-)subpopulation scRNA-seq data, including cell-level mixed models and methods based on aggregated “pseudobulk” data, as well as a flexible simulation platform that mimics both single and multi-sample scRNA-seq data.

Getting started

Package details

Bioconductor views DifferentialExpression ImmunoOncology Sequencing SingleCell Software StatisticalMethod Visualization
LicenseGPL (>= 2)
URL https://github.com/HelenaLC/muscat
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
HelenaLC/muscat documentation built on May 10, 2021, 1:11 a.m.