pbMDS: Pseudobulk-level MDS plot
In HelenaLC/muscat: Multi-sample multi-group scRNA-seq data analysis tools
pbMDS R Documentation
Pseudobulk-level MDS plot
Description
Renders a multidimensional scaling (MDS)
where each point represents a cluster-sample instance;
with points colored by cluster ID and shaped by group ID.
Usage
pbMDS(x)
Arguments
x
a SingleCellExperiment
containing cluster-sample pseudobulks as returned by
aggregateData with argument
by = c("cluster_id", "sample_id").
Value
a ggplot object.
Author(s)
Helena L Crowell & Mark D Robinson
Examples
data(example_sce)
pb <- aggregateData(example_sce)
pbMDS(pb)
HelenaLC/muscat documentation built on Oct. 9, 2024, 11:59 a.m.
R Package Documentation
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| pbMDS | R Documentation |
Pseudobulk-level MDS plot
Description
Renders a multidimensional scaling (MDS) where each point represents a cluster-sample instance; with points colored by cluster ID and shaped by group ID.
Usage
pbMDS(x)
Arguments
x |
a |
Value
a ggplot object.
Author(s)
Helena L Crowell & Mark D Robinson
Examples
data(example_sce)
pb <- aggregateData(example_sce)
pbMDS(pb)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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