Man pages for HelenaLC/muscat
Multi-sample multi-group scRNA-seq data analysis tools
| aggregateData | Aggregation of single-cell to pseudobulk data |
| calcExprFreqs | calcExprFreqs |
| data | Example datasets |
| mmDS | DS analysis using mixed-models (MM) |
| pbDS | pseudobulk DS analysis |
| pbFlatten | pbFlatten Flatten pseudobulk SCE |
| pbHeatmap | Heatmap of cluster-sample pseudobulks |
| pbMDS | Pseudobulk-level MDS plot |
| prepSCE | Prepare SCE for DS analysis |
| prepSim | SCE preparation for 'simData' |
| resDS | resDS Formatting of DS analysis results |
| simData | simData |
| stagewise_DS_DD | Perform two-stage testing on DS and DD analysis results |
