plotAdvice: plotAdvice Plots stochastic stock dynamics against refpts for...

In Henning-Winker/FLRef: Reference point computation for advice rules

plotAdvice Plots stochastic stock dynamics against refpts for constant Fsim()

Description

plotAdvice Plots stochastic stock dynamics against refpts for constant Fsim()

Usage

plotAdvice(
  object,
  rpts = "missing",
  type = NULL,
  yield = c("catch", "landings")[1],
  plotrefs = TRUE,
  probs = c(0.05, 0.2, 0.5, 0.8, 0.95),
  colour = "dodgerblue",
  ncol = NULL,
  label.size = 2.5
)

Arguments

type	age-structured "asm" or surplus production "spm" plotting style
yield	option to select "catch" (default) or "landings"
plotrefs	if TRUE reference points are plotted
probs	determine credibility intervals, default 80th, 90th percentiles #' @param ncol number of plot panel columns
colour	color of CIs
label.size	size of refpts labels
stock	FLStock or FLStockR
refpts	as FLPar or Fbrp() if FLStockR is not provided or should be overwritten

Value

ggplot

Examples

data(ple4)
srr = srrTMB(as.FLSR(ple4,model=rickerSV),spr0=spr0y(ple4))
brp = computeFbrp(stock=ple4,sr=srr,proxy=c("sprx","f0.1","fe40"),blim=0.1,type="b0")
plotAdvice (ple4,brp)

Henning-Winker/FLRef documentation built on Dec. 16, 2024, 7:23 p.m.