calculateParametersGsb.AffymetrixCelSet: Computes parameters for adjustment of specific binding

In HenrikBengtsson/aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

Computes parameters for adjustment of specific binding

Description

Computes parameters for adjustment of specific binding.

Usage

## S3 method for class 'AffymetrixCelSet'
calculateParametersGsb(this, nbrOfPms=25000, affinities=NULL, seed=NULL, ...,
  verbose=FALSE)

Arguments

nbrOfPms	The number of random PMs to use in estimation.
affinities	A numeric vector of probe affinities.
seed	An (optional) integer specifying a temporary random seed to be used during processing. The random seed is set to its original state when done. If NULL, it is not set.
...	Not used.
verbose	See Verbose.

Details

This method is not constant in memory! /HB 2007-03-26

Author(s)

Ken Simpson

HenrikBengtsson/aroma.affymetrix documentation built on Feb. 20, 2024, 9:07 p.m.