Description Usage Arguments Examples
Creating table for analysis of FUNGuild.
1 | funguild_db(.otu_table, .identify_list, .tax_pat)
|
.otu_table |
table (see example). |
.identify_list |
identifying result (see example). |
.tax_pat |
character, specify taxonomic levels containing .identify_list in same order. |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | # make otu table.
otu_table <- data.frame(
samplename = c("sample1", "sample2"),
otu1 = c(1, 0),
otu2 = c(0, 39)
)
# make identify list.
identify_list <- data.frame(
otu = c("otu1", "otu2"),
phylum = c("p1", "p2"),
order = c("o1", "o2"),
family = c("f1", "f2"),
genus = c("g1", "g2")
)
funguild_db(.otu_table = otu_table,
.identify_list = identify_list,
.tax_pat = c("phylum", "order", "family", "genus"))
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.