analyze_LR: Generate ligand-receptor table based on gene signatures
In Hla-Lab/SeuratExplorer: An Interactive Shiny App for Visualizing scRNAseq Data Processed in Seurat
View source: R/ligand_receptor.R
analyze_LR R Documentation
Generate ligand-receptor table based on gene signatures
Description
Generate ligand-receptor table based on gene signatures
Usage
analyze_LR(signatures, db)
Arguments
signatures
Output of Seurat function FindAllMarkers() with only.pos = T
db_path
Path to static CellTalk database as .tsv
Value
A LR table with labeled interactions
Hla-Lab/SeuratExplorer documentation built on May 22, 2022, 10:44 a.m.
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View source: R/ligand_receptor.R
| analyze_LR | R Documentation |
Generate ligand-receptor table based on gene signatures
Description
Generate ligand-receptor table based on gene signatures
Usage
analyze_LR(signatures, db)
Arguments
signatures |
Output of Seurat function FindAllMarkers() with only.pos = T |
db_path |
Path to static CellTalk database as .tsv |
Value
A LR table with labeled interactions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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