Files in HopkinsIDD/covidImportation
Estimating the Number of Imported COVID-19 Cases
.github/workflows/ci.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BasicEpiAnalyses.R
R/DataUtils.R
R/PlotUtils.R
R/airport_to_county_import_distrib.R
R/data-descriptions.R
R/ggheat_func_source.R
R/import_model_source.R
README.md
covidImportation_run_US_Territories.Rmd
covidImportation_tutorial.Rmd
covidImportation_tutorial_MD.Rmd
covidImportation_tutorial_WI.Rmd
data-raw/China_popsize_census_2010.csv
data-raw/WikipediaWuhanPre1-20-2020.csv
data-raw/airport-codes.csv
data-raw/airport_attribution.csv
data-raw/china_province_pop_data.csv
data-raw/other_locations_pop.csv
data-raw/pop_data.csv
data-raw/us_counties.csv
data-raw/us_state_pop.csv
data-raw/us_territory_pop.csv
data/airport_attribution.rda
data/airport_data.rda
data/jhucsse_case_data.rda
data/pop_data.rda
data/travel_restrictions.rda
data/tsa_throughput.csv
data/underreporting.rda
data/us_counties.rda
data/usa_oag_aggr_travel.rda
data/wikipedia_cases.rda
inst/ResultsUtils.R
inst/get_case_data.R
inst/importation_analysis.R
inst/importation_analysis_detection.R
inst/make-other-data.R
inst/oag_data_cleaning.R
inst/plot_importation_estimates.R
inst/plot_importation_estimates_detection.R
inst/setup_pop_data.R
inst/testing_import.R
inst/testing_import_fullUSA.R
man/airport_attribution.Rd
man/airport_data.Rd
man/apply_travel_restrictions.Rd
man/calc_nb_import_pars.Rd
man/correct_for_Hubei_reporting.Rd
man/distrib_county_imports.Rd
man/do_airport_attribution.Rd
man/est_daily_incidence.Rd
man/est_daily_incidence_corrected.Rd
man/est_import_detect_dates.Rd
man/est_imports_base.Rd
man/expand_travel_restrict.Rd
man/find_recent_file.Rd
man/fit_ispline.Rd
man/get_CA_metro_labels.Rd
man/get_JHUCSSE_data.Rd
man/get_JHUCSSE_deaths.Rd
man/get_airport_city.Rd
man/get_airport_country.Rd
man/get_airport_state.Rd
man/get_airports_to_consider.Rd
man/get_clean_JHUCSSE_data.Rd
man/get_clean_JHUCSSE_deaths.Rd
man/get_county_pops.Rd
man/get_global_cum.Rd
man/get_incidence_data.Rd
man/get_incidence_fits.Rd
man/get_mean_imports.Rd
man/get_oag_travel.Rd
man/get_oag_travel_fulldata.Rd
man/imports_airport_clustering.Rd
man/make_daily_travel.Rd
man/make_daily_travel_faster.Rd
man/make_input_data.Rd
man/make_meanD.Rd
man/plot_imports_stackeddest.Rd
man/plot_incidence_ests_report.Rd
man/plot_rep_cases.Rd
man/pop_data.Rd
man/pull_JHUCSSE_github_data.Rd
man/read_JHUCSSE_cases.Rd
man/run_daily_import_model.Rd
man/run_daily_import_model_par.Rd
man/run_full_distrib_imports.Rd
man/run_importations.Rd
man/setup_airport_attribution.Rd
man/setup_and_run_importations.Rd
man/setup_importations.Rd
man/travel_restrictions.Rd
man/underreporting.Rd
man/update_JHUCSSE_github_data.Rd
tests/testthat/test-DataUtils.R
tests/testthat/test-airport_to_county_import_distrib.R
