Files in HoujieWang/Rtropical
Data Analysis Tools over Space of Phylogenetic Trees Using Tropical Geometry
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
CRAN-RELEASE
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/all_trees.R
R/apicomplexa.R
R/as.matrix.multiPhylo.R
R/as.vector.phylo.R
R/assignment_finder.R
R/coef.cv.tropsvm.R
R/coef.tropsvm.R
R/cv.tropsvm.R
R/dets.R
R/linsp_to_poly.R
R/lungfish.R
R/make.matrix.R
R/plot.tropca.R
R/polytope_iso.R
R/predict.cv.tropsvm.R
R/predict.tropsvm.R
R/read.nexus.to.data.matrix.R
R/read.tree.to.data.matrix.R
R/sim_trees.R
R/summary.cv.tropsvm.R
R/tropFW.R
R/tropdet.R
R/troppca.linsp.R
R/troppca.linsp2poly.R
R/troppca.obj.R
R/troppca.poly.R
R/troproj.linsp.R
R/troproj.poly.R
R/tropseg.R
R/tropsvm.R
R/tropsvm_helper.R
README.md
Rtropical.Rproj
cran-comments.md
data/all_trees.rda
data/apicomplexa.RData
data/lungfish.rda
data/sim_trees.RData
man/all_trees.Rd
man/apicomplexa.Rd
man/as.matrix.multiPhylo.Rd
man/as.vector.phylo.Rd
man/assignment_finder.Rd
man/coef.cv.tropsvm.Rd
man/coef.tropsvm.Rd
man/cv.tropsvm.Rd
man/dets.Rd
man/linsp_to_poly.Rd
man/lungfish.Rd
man/make.matrix.Rd
man/plot.troppca.Rd
man/polytope_iso.Rd
man/predict.cv.tropsvm.Rd
man/predict.tropsvm.Rd
man/read.nexus.to.data.matrix.Rd
man/read.tree.to.data.matrix.Rd
man/sim_trees.Rd
man/summary.cv.tropsvm.Rd
man/tropFW.Rd
man/tropdet.Rd
man/troppca.linsp.Rd
man/troppca.linsp2poly.Rd
man/troppca.obj.Rd
man/troppca.poly.Rd
man/tropproj.linsp.Rd
man/tropproj.poly.Rd
man/tropseg.Rd
man/tropsvm.Rd
man/tropsvm_helper.Rd
tests/testthat.R
tests/testthat/test-as.matrix.R
tests/testthat/test-projection.R
vignettes/.gitignore
vignettes/usage.Rmd
