Files in HowardChao/RNA-seq_pipeline

.Rbuildignore
.Rproj.user/20DC9364/console06/INDEX001
.Rproj.user/20DC9364/cpp-definition-cache
.Rproj.user/20DC9364/pcs/debug-breakpoints.pper
.Rproj.user/20DC9364/pcs/files-pane.pper
.Rproj.user/20DC9364/pcs/source-pane.pper
.Rproj.user/20DC9364/pcs/windowlayoutstate.pper
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.Rproj.user/20DC9364/persistent-state
.Rproj.user/20DC9364/saved_source_markers
.Rproj.user/20DC9364/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R R/DEG_plot.R R/Quality_control.R R/cmd_batch_install_tools.R R/cmd_batch_rnaseq_pipline.R R/default_setting.R R/functional_analysis.R R/global_variable.R R/hisat2_samtools_stringtie_ballgown_related.R R/prepDE_create_count_table.R R/utility_installtool_rnaseqpipline.R
RNASeq.Rproj
man/BallgownPreprocess.Rd man/CheckBallgownObject.Rd man/CheckDirAll.Rd man/CheckGffcompare.Rd man/CheckHisat2.Rd man/CheckInputDirFiles.Rd man/CheckPrefixPath.Rd man/CheckSamtools.Rd man/CheckStringTie.Rd man/CheckToolAll.Rd man/CopyInputDir.Rd man/CreateHisat2Index.Rd man/DEDESeq2Plot.Rd man/DEGCorrelationPlot.Rd man/DEGFrequencyPlot.Rd man/DEGMAPlot.Rd man/DEGPCAPlot.Rd man/DEGTranscriptRelatedPlot.Rd man/DEGVolcanoPlot.Rd man/DEGedgeRPlot.Rd man/ExportPath.Rd man/GffcompareRefSample.Rd man/Hisat2AlignmentDefault.Rd man/Hisat2ReportAssemble.Rd man/InstallAll.Rd man/InstallGffcompareBinary.Rd man/InstallHisat2Bianry.Rd man/InstallSamtoolsBinary.Rd man/InstallStringTieBinary.Rd man/InstallToolsCMD.Rd man/LoadBallgownObject.Rd man/MkdirAll.Rd man/MkdirGeneDir.Rd man/MkdirRNAseq_bin.Rd man/MkdirRNAseq_results.Rd man/PreDECountTable.Rd man/ProgressGenesFiles.Rd man/QualityControl.Rd man/RNASeqWorkFlowParam-class.Rd man/RNAseqPipeline.Rd man/RNAseqPipelineCMD.Rd man/SamtoolsToBam.Rd man/StringTieAssemble.Rd man/StringTieMergeTrans.Rd man/StringTieToBallgown.Rd man/get_os.Rd vignettes/my-vignette.R vignettes/my-vignette.Rmd
vignettes/my-vignette.html
HowardChao/RNA-seq_pipeline documentation built on July 12, 2018, 10:57 a.m.