RNASeqWorkFlowParam-class: RNASeq An S4 class for storing RNA-Seq workflow parameters of...
In HowardChao/RNA-seq_pipeline:

RNASeq An S4 class for storing RNA-Seq workflow parameters of this package

path.prefix: the directory holding installations and analysis results
input.path.prefix: user has to prepared valid 'input_files/' under this directory
gene.name: gene name defined in this RNA-Seq workflow (ex. gene.name.fa, gene.name.gtf)
sample.pattern: sample pattern describing the name of raw fastqc.gz files
experiment.type: set the type of the RNA-Seq analysis workflow. Character of one of "two.group", "multi.group.pairs", "multi.group.anova"
main.variable: main sample grouping variable
additional.variable: additional sample information

Kuan-Hao, Chao

  data(workflowParam)
  class(workflowParam) #"RNASeqWorkFlowParam"
  workflowParam@path.prefix
  workflowParam@input.path.prefix
  workflowParam@gene.name
  workflowParam@sample.pattern
  workflowParam@experiment.type
  workflowParam@main.variable
  workflowParam@additional.variable