Description Slots Author(s) Examples
RNASeq An S4 class for storing RNA-Seq workflow parameters of this package
path.prefix
the directory holding installations and analysis results
input.path.prefix
user has to prepared valid 'input_files/' under this directory
gene.name
gene name defined in this RNA-Seq workflow (ex. gene.name.fa, gene.name.gtf)
sample.pattern
sample pattern describing the name of raw fastqc.gz files
experiment.type
set the type of the RNA-Seq analysis workflow. Character of one of "two.group", "multi.group.pairs", "multi.group.anova"
main.variable
main sample grouping variable
additional.variable
additional sample information
Kuan-Hao, Chao
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