Description Usage Arguments Value Examples
View source: R/MakeReference.R
This function takes input chromatof files from metabolite standards and parses them into a dataframe of retention time indexed standards that can be used as an input for ConsensusAlign function
1 | MakeReference(inputFileList, RT1_Standards = NULL, RT2_Standards = NULL)
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inputFileList |
A character vector of full file paths to the metabolite standard chromatof files to include in library. |
RT1_Standards |
A character vector with the name of all first retention time standards to use to index metabolites. Defaults to NULL. |
RT2_Standards |
A character vector with the name of all second retention time standards to use to index metabolites. Defaults to NULL. |
Returns a list with a retention standard indexed metabolite library that can be used in the standard library argument of the ConsensusAlign function
1 2 | MakeReference(c(system.file("extdata", "Alanine_150226_1.txt", package="R2DGC"),
system.file("extdata", "Serine_022715_1.txt", package="R2DGC")))
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