Man pages for Huimin-stat/simTransmission
Simulate Transmission Tree

cases.plotGenerate summary table and barplots (optional) of...
distNodeTorootCalculate the distance/time of input node from the first...
findInfectionsFind the infected individual and its next generation
modelTreefromTransmissionGenerate transmission tree in phylip format
plotTransNetPlot transmission network
plotTreePlot phylogenetic/transmission tree
RunifGenerate random numbers from uniform distribution with input...
simCoalModeltreeSimulate phylogenetic/coalescent tree from transmission tree
simTransmissionSimulate a transmission tree considering...
subTreeSimulate sub-transmission tree from one ancestor to its next...
timeTruncateTruncate transmission matrix by a given time and produce...
toAdjGenerate transmission matrix that can be used to plot...
transCurrentGenerate the first infected individual in a transmission tree...
transNextGenerate transmission information of next generation with...
Huimin-stat/simTransmission documentation built on Sept. 23, 2020, 12:43 a.m.