cases.plot | Generate summary table and barplots (optional) of... |
distNodeToroot | Calculate the distance/time of input node from the first... |
findInfections | Find the infected individual and its next generation |
modelTreefromTransmission | Generate transmission tree in phylip format |
plotTransNet | Plot transmission network |
plotTree | Plot phylogenetic/transmission tree |
Runif | Generate random numbers from uniform distribution with input... |
simCoalModeltree | Simulate phylogenetic/coalescent tree from transmission tree |
simTransmission | Simulate a transmission tree considering... |
subTree | Simulate sub-transmission tree from one ancestor to its next... |
timeTruncate | Truncate transmission matrix by a given time and produce... |
toAdj | Generate transmission matrix that can be used to plot... |
transCurrent | Generate the first infected individual in a transmission tree... |
transNext | Generate transmission information of next generation with... |
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