simCoalModeltree: Simulate phylogenetic/coalescent tree from transmission tree
In Huimin-stat/simTransmission: Simulate Transmission Tree
Description
Usage
Arguments
Value
Description
Simulate phylogenetic/coalescent tree from transmission tree
Usage
1
simCoalModeltree(ntree, modeltree, theta)
Arguments
ntree
number of coalescent tree that one wants to generate
modeltree
transmission tree in phylip format
theta
product of effective sample size and mutation rate per day
Value
coalescent tree in phylip format
Huimin-stat/simTransmission documentation built on Sept. 23, 2020, 12:43 a.m.
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Description Usage Arguments Value
Description
Simulate phylogenetic/coalescent tree from transmission tree
Usage
1 | simCoalModeltree(ntree, modeltree, theta)
|
Arguments
ntree |
number of coalescent tree that one wants to generate |
modeltree |
transmission tree in phylip format |
theta |
product of effective sample size and mutation rate per day |
Value
coalescent tree in phylip format
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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