cases.plot: Generate summary table and barplots (optional) of...
In Huimin-stat/simTransmission: Simulate Transmission Tree
Description
Usage
Arguments
Value
View source: R/simTransmission.R
Description
Generate summary table and barplots (optional) of asymptomatic & symptomatic cases at given times since pandemic starts
Usage
1
cases.plot(transmatrix, times, plot = TRUE)
Arguments
transmatrix
information matrix of transmission including infection time, recovery/dead time, number of people infected by current individual, current node number of current individual, node number of individual who infected the current person (ancestor), asymptomatic information, diagnosed time and death information of current person
times
a vector of truncated times (in days) during pandemic
plot
a logical parameter indicating whether to produce barplot or not (It's recommended to set to FALSE if vector "times" has a length longer than 15)
Value
barplots (optional) and summary tables illustrating number of cases of six groups (asymptomatic_infectious, asymptomatic_recovered, symptomatic_latent, symptomatic_diagnosed, symptomatic_recovered, dead) by truncated times.
Huimin-stat/simTransmission documentation built on Sept. 23, 2020, 12:43 a.m.
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Description Usage Arguments Value
View source: R/simTransmission.R
Description
Generate summary table and barplots (optional) of asymptomatic & symptomatic cases at given times since pandemic starts
Usage
1 | cases.plot(transmatrix, times, plot = TRUE)
|
Arguments
transmatrix |
information matrix of transmission including infection time, recovery/dead time, number of people infected by current individual, current node number of current individual, node number of individual who infected the current person (ancestor), asymptomatic information, diagnosed time and death information of current person |
times |
a vector of truncated times (in days) during pandemic |
plot |
a logical parameter indicating whether to produce barplot or not (It's recommended to set to FALSE if vector "times" has a length longer than 15) |
Value
barplots (optional) and summary tables illustrating number of cases of six groups (asymptomatic_infectious, asymptomatic_recovered, symptomatic_latent, symptomatic_diagnosed, symptomatic_recovered, dead) by truncated times.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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