Description Arguments Author(s) Examples
It takes as inputs two pollen sequences produced by the function PrepareInputSequences, and computes the best slotting.
sequences |
A list produced by the function PrepareInputSequences or DistanceMatrix |
compute.p.value |
Boolean. Use TRUE to compute p-values via distance matrix randomization. |
method |
Either "manhattan" computed as sum(abs(x - y)), "hellinger" computed as sqrt(1/2 * sum(sqrt(x)-sqrt(y))^2), or "euclidean", computed as sqrt(sum((x - y)^2)). |
silent |
Boolean. Use TRUE to remove all messages. |
diagonal |
Boolean. TRUE to compute the sequence slotting using diagonals (true shortest path). FALSE to compute the sequence slotting without considering diagonals. Using diagonals produces lower psi values but better alignments between sequences. |
Blas Benito <blasbenito@gmail.com>
1 2 3 | #generating random input data
results.table=GenerateResultsTable(10)
str(results.table)
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