Files in IMOS-AnimalTracking/remora
Rapid Extraction of Marine Observations for Roving Animals
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/build_urls.R
R/dataDownload.R
R/extractBlue.R
R/extractEnv.R
R/extractMoor.R
R/extract_var.R
R/getDataQC.R
R/getDistance.R
R/getOverlap.R
R/get_expert_distribution_shp_CAAB_qc.R
R/get_expert_distribution_shp_qc.R
R/globals.R
R/grabQC.R
R/imos_variables.R
R/merge.moor.R
R/mooringDownload.R
R/mooringTable.R
R/plotDT.r
R/plotQC.R
R/pull_var.R
R/qc.R
R/remora-package.R
R/remoteNCDF.R
R/runQC.R
R/shinyReport.R
R/shinyReportFunctions.R
R/shortest_dist2_qc.R
R/sysdata.rda
R/windDir.R
R/windSpd.R
R/writeQC.R
R/write_summary_qc.R
README.md
_pkgdown.yml
data-raw/spatial_qc_rasters.R
data/TownsvilleReefQC.RData
data/data_with_sst_and_current.RData
data/imos_variables_table.RData
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/.DS_Store
docs/articles/extractEnv.html
docs/articles/extractEnv_files/header-attrs-2.11/header-attrs.js
docs/articles/extractEnv_files/kePrint-0.0.1/kePrint.js
docs/articles/extractEnv_files/lightable-0.0.1/lightable.css
docs/articles/extractMoor.html
docs/articles/extractMoor_files/header-attrs-2.11/header-attrs.js
docs/articles/extractMoor_files/kePrint-0.0.1/kePrint.js
docs/articles/extractMoor_files/lightable-0.0.1/lightable.css
docs/articles/images/.DS_Store
docs/articles/images/Bull_Shark.png
docs/articles/images/IMOS_logo-stacked_transparent.png
docs/articles/images/env_extract/env_extract_plot1.png
docs/articles/images/env_extract/env_extract_plot2.png
docs/articles/images/env_extract/env_extract_plot3.png
docs/articles/images/env_extract/env_extract_plot4.png
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docs/articles/images/env_extract/env_extract_plot7.png
docs/articles/images/gplv3-127x51.png
docs/articles/images/logo.png
docs/articles/images/logos_banner.png
docs/articles/images/moor_extract/moor_extract_plot10.png
docs/articles/images/moor_extract/moor_extract_plot3.png
docs/articles/images/moor_extract/moor_extract_plot4.png
docs/articles/images/moor_extract/moor_extract_plot5.png
docs/articles/images/moor_extract/moor_extract_plot6.png
docs/articles/images/moor_extract/moor_extract_plot7.png
docs/articles/images/moor_extract/moor_extract_plot8.png
docs/articles/images/moor_extract/moor_extract_plot9.png
docs/articles/images/overview-images.png
docs/articles/images/receiver_report/array_performance.png
docs/articles/images/receiver_report/detections-webapp.png
docs/articles/images/receiver_report/detections_map.png
docs/articles/images/receiver_report/detections_overview.png
docs/articles/images/receiver_report/detections_per_hour.png
docs/articles/images/receiver_report/detections_per_station.png
docs/articles/images/receiver_report/receivers-webapp.png
docs/articles/images/receiver_report/select_detections.png
docs/articles/images/receiver_report/select_receiver_metadata.png
docs/articles/images/receiver_report/transmitters_overview.png
docs/articles/images/remora_hex_logo.png
docs/articles/images/transmitter_report/abacus_plot.png
docs/articles/images/transmitter_report/connectivity_plot.png
docs/articles/images/transmitter_report/detections-webapp.png
docs/articles/images/transmitter_report/detections_network_map.png
docs/articles/images/transmitter_report/select-detections.png
docs/articles/images/transmitter_report/transmitter_deployments.png
docs/articles/images/transmitter_report/transmitter_detections.png
docs/articles/images/workflow_diagram.png
docs/articles/index.html
docs/articles/runQC.html
docs/articles/runQC_files/header-attrs-2.11/header-attrs.js
docs/articles/shinyReport_receivers.html
docs/articles/shinyReport_receivers_files/header-attrs-2.11/header-attrs.js
docs/articles/shinyReport_transmitters.html
docs/articles/shinyReport_transmitters_files/header-attrs-2.11/header-attrs.js
docs/articles/style.css
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
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docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/TownsvilleReefQC.html
docs/reference/choose_file.html
docs/reference/data_with_sst_and_current.html
docs/reference/det_per_receiver_location.html
docs/reference/det_per_species.html
docs/reference/det_per_station.html
docs/reference/det_per_tag.html
docs/reference/det_per_tag_location.html
docs/reference/det_species_station.html
docs/reference/dot-build_urls.html
docs/reference/dot-extract_var.html
docs/reference/dot-pull_env.html
docs/reference/extractEnv.html
docs/reference/extractMoor.html
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docs/reference/getDistance.html
docs/reference/getOverlap.html
docs/reference/get_data.html
docs/reference/get_expert_distribution_shp.html
docs/reference/get_expert_distribution_shp_CAAB.html
docs/reference/grabQC.html
docs/reference/imos_variables.html
docs/reference/imos_variables_table.html
docs/reference/index.html
docs/reference/merge.moor.html
docs/reference/mooringDownload.html
docs/reference/mooringTable.html
docs/reference/n_detections.html
docs/reference/n_receivers.html
docs/reference/n_species.html
docs/reference/n_tags.html
docs/reference/plotDT.html
docs/reference/plotQC-1.png
docs/reference/plotQC.html
docs/reference/qc.html
docs/reference/remora-package.html
docs/reference/runQC-1.png
docs/reference/runQC.html
docs/reference/sei.html
docs/reference/shinyReport.html
docs/reference/shortest_dist.html
docs/reference/writeQC.html
docs/reference/write_summary.html
docs/sitemap.xml
index.md
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inst/ALA_Shapefile/Coryphaena_hippurus/Coryphaena_hippurus.prj
inst/ALA_Shapefile/Coryphaena_hippurus/Coryphaena_hippurus.shp
inst/ALA_Shapefile/Coryphaena_hippurus/Coryphaena_hippurus.shx
inst/ALA_Shapefile/Crocodylus_porosus_likely/.DS_Store
inst/ALA_Shapefile/Crocodylus_porosus_likely/Crocodylus_porosus_likely.dbf
inst/ALA_Shapefile/Crocodylus_porosus_likely/Crocodylus_porosus_likely.fix
inst/ALA_Shapefile/Crocodylus_porosus_likely/Crocodylus_porosus_likely.prj
inst/ALA_Shapefile/Crocodylus_porosus_likely/Crocodylus_porosus_likely.shp
inst/ALA_Shapefile/Crocodylus_porosus_likely/Crocodylus_porosus_likely.shx
inst/ALA_Shapefile/Dasyatis_brevicaudata/.DS_Store
inst/ALA_Shapefile/Dasyatis_brevicaudata/Dasyatis_brevicaudata.dbf
inst/ALA_Shapefile/Dasyatis_brevicaudata/Dasyatis_brevicaudata.fix
inst/ALA_Shapefile/Dasyatis_brevicaudata/Dasyatis_brevicaudata.prj
inst/ALA_Shapefile/Dasyatis_brevicaudata/Dasyatis_brevicaudata.shp
inst/ALA_Shapefile/Dasyatis_brevicaudata/Dasyatis_brevicaudata.shx
inst/ALA_Shapefile/Dasyatis_fluviorum/.DS_Store
inst/ALA_Shapefile/Dasyatis_fluviorum/Dasyatis_fluviorum.dbf
inst/ALA_Shapefile/Dasyatis_fluviorum/Dasyatis_fluviorum.fix
inst/ALA_Shapefile/Dasyatis_fluviorum/Dasyatis_fluviorum.prj
inst/ALA_Shapefile/Dasyatis_fluviorum/Dasyatis_fluviorum.shp
inst/ALA_Shapefile/Dasyatis_fluviorum/Dasyatis_fluviorum.shx
inst/ALA_Shapefile/Dugong_dugon_maybe/.DS_Store
inst/ALA_Shapefile/Dugong_dugon_maybe/Dugong_dugon_maybe.dbf
inst/ALA_Shapefile/Dugong_dugon_maybe/Dugong_dugon_maybe.fix
inst/ALA_Shapefile/Dugong_dugon_maybe/Dugong_dugon_maybe.prj
inst/ALA_Shapefile/Dugong_dugon_maybe/Dugong_dugon_maybe.shp
inst/ALA_Shapefile/Dugong_dugon_maybe/Dugong_dugon_maybe.shx
inst/ALA_Shapefile/Eleutheronema_tetradactylum/.DS_Store
inst/ALA_Shapefile/Eleutheronema_tetradactylum/Eleutheronema_tetradactylum.dbf
inst/ALA_Shapefile/Eleutheronema_tetradactylum/Eleutheronema_tetradactylum.fix
inst/ALA_Shapefile/Eleutheronema_tetradactylum/Eleutheronema_tetradactylum.prj
inst/ALA_Shapefile/Eleutheronema_tetradactylum/Eleutheronema_tetradactylum.shp
inst/ALA_Shapefile/Eleutheronema_tetradactylum/Eleutheronema_tetradactylum.shx
inst/ALA_Shapefile/Elusor_macrurus_likely/.DS_Store
inst/ALA_Shapefile/Elusor_macrurus_likely/Elusor_macrurus_likely.dbf
inst/ALA_Shapefile/Elusor_macrurus_likely/Elusor_macrurus_likely.fix
inst/ALA_Shapefile/Elusor_macrurus_likely/Elusor_macrurus_likely.prj
inst/ALA_Shapefile/Elusor_macrurus_likely/Elusor_macrurus_likely.shp
inst/ALA_Shapefile/Elusor_macrurus_likely/Elusor_macrurus_likely.shx
inst/ALA_Shapefile/Epinephelus_multinotatus/.DS_Store
inst/ALA_Shapefile/Epinephelus_multinotatus/Epinephelus_multinotatus.dbf
inst/ALA_Shapefile/Epinephelus_multinotatus/Epinephelus_multinotatus.fix
inst/ALA_Shapefile/Epinephelus_multinotatus/Epinephelus_multinotatus.prj
inst/ALA_Shapefile/Epinephelus_multinotatus/Epinephelus_multinotatus.shp
inst/ALA_Shapefile/Epinephelus_multinotatus/Epinephelus_multinotatus.shx
inst/ALA_Shapefile/Epinephelus_rivulatus/.DS_Store
inst/ALA_Shapefile/Epinephelus_rivulatus/Epinephelus_rivulatus.dbf
inst/ALA_Shapefile/Epinephelus_rivulatus/Epinephelus_rivulatus.fix
inst/ALA_Shapefile/Epinephelus_rivulatus/Epinephelus_rivulatus.prj
inst/ALA_Shapefile/Epinephelus_rivulatus/Epinephelus_rivulatus.shp
inst/ALA_Shapefile/Epinephelus_rivulatus/Epinephelus_rivulatus.shx
inst/ALA_Shapefile/Epinephelus_tauvina/.DS_Store
inst/ALA_Shapefile/Epinephelus_tauvina/Epinephelus_tauvina.dbf
inst/ALA_Shapefile/Epinephelus_tauvina/Epinephelus_tauvina.fix
inst/ALA_Shapefile/Epinephelus_tauvina/Epinephelus_tauvina.prj
inst/ALA_Shapefile/Epinephelus_tauvina/Epinephelus_tauvina.shp
inst/ALA_Shapefile/Epinephelus_tauvina/Epinephelus_tauvina.shx
inst/ALA_Shapefile/Eusphyra_blochii/.DS_Store
inst/ALA_Shapefile/Eusphyra_blochii/Eusphyra_blochii.dbf
inst/ALA_Shapefile/Eusphyra_blochii/Eusphyra_blochii.fix
inst/ALA_Shapefile/Eusphyra_blochii/Eusphyra_blochii.prj
inst/ALA_Shapefile/Eusphyra_blochii/Eusphyra_blochii.shp
inst/ALA_Shapefile/Eusphyra_blochii/Eusphyra_blochii.shx
inst/ALA_Shapefile/Furgaleus_macki/.DS_Store
inst/ALA_Shapefile/Furgaleus_macki/Furgaleus_macki.dbf
inst/ALA_Shapefile/Furgaleus_macki/Furgaleus_macki.fix
inst/ALA_Shapefile/Furgaleus_macki/Furgaleus_macki.prj
inst/ALA_Shapefile/Furgaleus_macki/Furgaleus_macki.shp
inst/ALA_Shapefile/Furgaleus_macki/Furgaleus_macki.shx
inst/ALA_Shapefile/Galeocerdo_cuvier/.DS_Store
inst/ALA_Shapefile/Galeocerdo_cuvier/Galeocerdo_cuvier.dbf
inst/ALA_Shapefile/Galeocerdo_cuvier/Galeocerdo_cuvier.fix
inst/ALA_Shapefile/Galeocerdo_cuvier/Galeocerdo_cuvier.prj
inst/ALA_Shapefile/Galeocerdo_cuvier/Galeocerdo_cuvier.shp
inst/ALA_Shapefile/Galeocerdo_cuvier/Galeocerdo_cuvier.shx
inst/ALA_Shapefile/Galeorhinus_galeus/.DS_Store
inst/ALA_Shapefile/Galeorhinus_galeus/Galeorhinus_galeus.dbf
inst/ALA_Shapefile/Galeorhinus_galeus/Galeorhinus_galeus.fix
inst/ALA_Shapefile/Galeorhinus_galeus/Galeorhinus_galeus.prj
inst/ALA_Shapefile/Galeorhinus_galeus/Galeorhinus_galeus.shp
inst/ALA_Shapefile/Galeorhinus_galeus/Galeorhinus_galeus.shx
inst/ALA_Shapefile/Girella_elevata/.DS_Store
inst/ALA_Shapefile/Girella_elevata/Girella_elevata.dbf
inst/ALA_Shapefile/Girella_elevata/Girella_elevata.fix
inst/ALA_Shapefile/Girella_elevata/Girella_elevata.prj
inst/ALA_Shapefile/Girella_elevata/Girella_elevata.shp
inst/ALA_Shapefile/Girella_elevata/Girella_elevata.shx
inst/ALA_Shapefile/Girella_tricuspidata/.DS_Store
inst/ALA_Shapefile/Girella_tricuspidata/Girella_tricuspidata.dbf
inst/ALA_Shapefile/Girella_tricuspidata/Girella_tricuspidata.fix
inst/ALA_Shapefile/Girella_tricuspidata/Girella_tricuspidata.prj
inst/ALA_Shapefile/Girella_tricuspidata/Girella_tricuspidata.shp
inst/ALA_Shapefile/Girella_tricuspidata/Girella_tricuspidata.shx
inst/ALA_Shapefile/Glaucostegus_typus/.DS_Store
inst/ALA_Shapefile/Glaucostegus_typus/Glaucostegus_typus.dbf
inst/ALA_Shapefile/Glaucostegus_typus/Glaucostegus_typus.fix
inst/ALA_Shapefile/Glaucostegus_typus/Glaucostegus_typus.prj
inst/ALA_Shapefile/Glaucostegus_typus/Glaucostegus_typus.shp
inst/ALA_Shapefile/Glaucostegus_typus/Glaucostegus_typus.shx
inst/ALA_Shapefile/Glyphis_glyphis/.DS_Store
inst/ALA_Shapefile/Glyphis_glyphis/Glyphis_glyphis.dbf
inst/ALA_Shapefile/Glyphis_glyphis/Glyphis_glyphis.fix
inst/ALA_Shapefile/Glyphis_glyphis/Glyphis_glyphis.prj
inst/ALA_Shapefile/Glyphis_glyphis/Glyphis_glyphis.shp
inst/ALA_Shapefile/Glyphis_glyphis/Glyphis_glyphis.shx
inst/ALA_Shapefile/Glyphis_glyphis_likely/.DS_Store
inst/ALA_Shapefile/Glyphis_glyphis_likely/Glyphis_glyphis_likely.dbf
inst/ALA_Shapefile/Glyphis_glyphis_likely/Glyphis_glyphis_likely.fix
inst/ALA_Shapefile/Glyphis_glyphis_likely/Glyphis_glyphis_likely.prj
inst/ALA_Shapefile/Glyphis_glyphis_likely/Glyphis_glyphis_likely.shp
inst/ALA_Shapefile/Glyphis_glyphis_likely/Glyphis_glyphis_likely.shx
inst/ALA_Shapefile/Glyphis_glyphis_maybe/.DS_Store
inst/ALA_Shapefile/Glyphis_glyphis_maybe/Glyphis_glyphis_maybe.dbf
inst/ALA_Shapefile/Glyphis_glyphis_maybe/Glyphis_glyphis_maybe.fix
inst/ALA_Shapefile/Glyphis_glyphis_maybe/Glyphis_glyphis_maybe.prj
inst/ALA_Shapefile/Glyphis_glyphis_maybe/Glyphis_glyphis_maybe.shp
inst/ALA_Shapefile/Glyphis_glyphis_maybe/Glyphis_glyphis_maybe.shx
inst/ALA_Shapefile/Gnathanodon_speciosus/.DS_Store
inst/ALA_Shapefile/Gnathanodon_speciosus/Gnathanodon_speciosus.dbf
inst/ALA_Shapefile/Gnathanodon_speciosus/Gnathanodon_speciosus.fix
inst/ALA_Shapefile/Gnathanodon_speciosus/Gnathanodon_speciosus.prj
inst/ALA_Shapefile/Gnathanodon_speciosus/Gnathanodon_speciosus.shp
inst/ALA_Shapefile/Gnathanodon_speciosus/Gnathanodon_speciosus.shx
inst/ALA_Shapefile/Hemiarius_dioctes/.DS_Store
inst/ALA_Shapefile/Hemiarius_dioctes/Hemiarius_dioctes.dbf
inst/ALA_Shapefile/Hemiarius_dioctes/Hemiarius_dioctes.fix
inst/ALA_Shapefile/Hemiarius_dioctes/Hemiarius_dioctes.prj
inst/ALA_Shapefile/Hemiarius_dioctes/Hemiarius_dioctes.shp
inst/ALA_Shapefile/Hemiarius_dioctes/Hemiarius_dioctes.shx
inst/ALA_Shapefile/Hemigaleus_australiensis/.DS_Store
inst/ALA_Shapefile/Hemigaleus_australiensis/Hemigaleus_australiensis.dbf
inst/ALA_Shapefile/Hemigaleus_australiensis/Hemigaleus_australiensis.fix
inst/ALA_Shapefile/Hemigaleus_australiensis/Hemigaleus_australiensis.prj
inst/ALA_Shapefile/Hemigaleus_australiensis/Hemigaleus_australiensis.shp
inst/ALA_Shapefile/Hemigaleus_australiensis/Hemigaleus_australiensis.shx
inst/ALA_Shapefile/Hemipristis_elongata/.DS_Store
inst/ALA_Shapefile/Hemipristis_elongata/Hemipristis_elongata.dbf
inst/ALA_Shapefile/Hemipristis_elongata/Hemipristis_elongata.fix
inst/ALA_Shapefile/Hemipristis_elongata/Hemipristis_elongata.prj
inst/ALA_Shapefile/Hemipristis_elongata/Hemipristis_elongata.shp
inst/ALA_Shapefile/Hemipristis_elongata/Hemipristis_elongata.shx
inst/ALA_Shapefile/Heterodontus_portusjacksoni/.DS_Store
inst/ALA_Shapefile/Heterodontus_portusjacksoni/Heterodontus_portusjacksoni.dbf
inst/ALA_Shapefile/Heterodontus_portusjacksoni/Heterodontus_portusjacksoni.fix
inst/ALA_Shapefile/Heterodontus_portusjacksoni/Heterodontus_portusjacksoni.prj
inst/ALA_Shapefile/Heterodontus_portusjacksoni/Heterodontus_portusjacksoni.shp
inst/ALA_Shapefile/Heterodontus_portusjacksoni/Heterodontus_portusjacksoni.shx
inst/ALA_Shapefile/Himantura_astra/.DS_Store
inst/ALA_Shapefile/Himantura_astra/Himantura_astra.dbf
inst/ALA_Shapefile/Himantura_astra/Himantura_astra.fix
inst/ALA_Shapefile/Himantura_astra/Himantura_astra.prj
inst/ALA_Shapefile/Himantura_astra/Himantura_astra.shp
inst/ALA_Shapefile/Himantura_astra/Himantura_astra.shx
inst/ALA_Shapefile/Himantura_dalyensis/.DS_Store
inst/ALA_Shapefile/Himantura_dalyensis/Himantura_dalyensis.dbf
inst/ALA_Shapefile/Himantura_dalyensis/Himantura_dalyensis.fix
inst/ALA_Shapefile/Himantura_dalyensis/Himantura_dalyensis.prj
inst/ALA_Shapefile/Himantura_dalyensis/Himantura_dalyensis.shp
inst/ALA_Shapefile/Himantura_dalyensis/Himantura_dalyensis.shx
inst/ALA_Shapefile/Himantura_fai/.DS_Store
inst/ALA_Shapefile/Himantura_fai/Himantura_fai.dbf
inst/ALA_Shapefile/Himantura_fai/Himantura_fai.fix
inst/ALA_Shapefile/Himantura_fai/Himantura_fai.prj
inst/ALA_Shapefile/Himantura_fai/Himantura_fai.shp
inst/ALA_Shapefile/Himantura_fai/Himantura_fai.shx
inst/ALA_Shapefile/Himantura_jenkinsii/.DS_Store
inst/ALA_Shapefile/Himantura_jenkinsii/Himantura_jenkinsii.dbf
inst/ALA_Shapefile/Himantura_jenkinsii/Himantura_jenkinsii.fix
inst/ALA_Shapefile/Himantura_jenkinsii/Himantura_jenkinsii.prj
inst/ALA_Shapefile/Himantura_jenkinsii/Himantura_jenkinsii.shp
inst/ALA_Shapefile/Himantura_jenkinsii/Himantura_jenkinsii.shx
inst/ALA_Shapefile/Himantura_leoparda/.DS_Store
inst/ALA_Shapefile/Himantura_leoparda/Himantura_leoparda.dbf
inst/ALA_Shapefile/Himantura_leoparda/Himantura_leoparda.fix
inst/ALA_Shapefile/Himantura_leoparda/Himantura_leoparda.prj
inst/ALA_Shapefile/Himantura_leoparda/Himantura_leoparda.shp
inst/ALA_Shapefile/Himantura_leoparda/Himantura_leoparda.shx
inst/ALA_Shapefile/Himantura_uarnak/.DS_Store
inst/ALA_Shapefile/Himantura_uarnak/Himantura_uarnak.dbf
inst/ALA_Shapefile/Himantura_uarnak/Himantura_uarnak.fix
inst/ALA_Shapefile/Himantura_uarnak/Himantura_uarnak.prj
inst/ALA_Shapefile/Himantura_uarnak/Himantura_uarnak.shp
inst/ALA_Shapefile/Himantura_uarnak/Himantura_uarnak.shx
inst/ALA_Shapefile/Hipposcarus_longiceps/.DS_Store
inst/ALA_Shapefile/Hipposcarus_longiceps/Hipposcarus_longiceps.dbf
inst/ALA_Shapefile/Hipposcarus_longiceps/Hipposcarus_longiceps.fix
inst/ALA_Shapefile/Hipposcarus_longiceps/Hipposcarus_longiceps.prj
inst/ALA_Shapefile/Hipposcarus_longiceps/Hipposcarus_longiceps.shp
inst/ALA_Shapefile/Hipposcarus_longiceps/Hipposcarus_longiceps.shx
inst/ALA_Shapefile/Kuhlia_rupestris/.DS_Store
inst/ALA_Shapefile/Kuhlia_rupestris/Kuhlia_rupestris.dbf
inst/ALA_Shapefile/Kuhlia_rupestris/Kuhlia_rupestris.fix
inst/ALA_Shapefile/Kuhlia_rupestris/Kuhlia_rupestris.prj
inst/ALA_Shapefile/Kuhlia_rupestris/Kuhlia_rupestris.shp
inst/ALA_Shapefile/Kuhlia_rupestris/Kuhlia_rupestris.shx
inst/ALA_Shapefile/Kyphosus_sydneyanus/.DS_Store
inst/ALA_Shapefile/Kyphosus_sydneyanus/Kyphosus_sydneyanus.dbf
inst/ALA_Shapefile/Kyphosus_sydneyanus/Kyphosus_sydneyanus.fix
inst/ALA_Shapefile/Kyphosus_sydneyanus/Kyphosus_sydneyanus.prj
inst/ALA_Shapefile/Kyphosus_sydneyanus/Kyphosus_sydneyanus.shp
inst/ALA_Shapefile/Kyphosus_sydneyanus/Kyphosus_sydneyanus.shx
inst/ALA_Shapefile/Kyphosus_vaigiensis/.DS_Store
inst/ALA_Shapefile/Kyphosus_vaigiensis/Kyphosus_vaigiensis.dbf
inst/ALA_Shapefile/Kyphosus_vaigiensis/Kyphosus_vaigiensis.fix
inst/ALA_Shapefile/Kyphosus_vaigiensis/Kyphosus_vaigiensis.prj
inst/ALA_Shapefile/Kyphosus_vaigiensis/Kyphosus_vaigiensis.shp
inst/ALA_Shapefile/Kyphosus_vaigiensis/Kyphosus_vaigiensis.shx
inst/ALA_Shapefile/Lates_calcarifer/.DS_Store
inst/ALA_Shapefile/Lates_calcarifer/Lates_calcarifer.dbf
inst/ALA_Shapefile/Lates_calcarifer/Lates_calcarifer.fix
inst/ALA_Shapefile/Lates_calcarifer/Lates_calcarifer.prj
inst/ALA_Shapefile/Lates_calcarifer/Lates_calcarifer.shp
inst/ALA_Shapefile/Lates_calcarifer/Lates_calcarifer.shx
inst/ALA_Shapefile/Lethrinus_atkinsoni/.DS_Store
inst/ALA_Shapefile/Lethrinus_atkinsoni/Lethrinus_atkinsoni.dbf
inst/ALA_Shapefile/Lethrinus_atkinsoni/Lethrinus_atkinsoni.fix
inst/ALA_Shapefile/Lethrinus_atkinsoni/Lethrinus_atkinsoni.prj
inst/ALA_Shapefile/Lethrinus_atkinsoni/Lethrinus_atkinsoni.shp
inst/ALA_Shapefile/Lethrinus_atkinsoni/Lethrinus_atkinsoni.shx
inst/ALA_Shapefile/Lethrinus_miniatus/.DS_Store
inst/ALA_Shapefile/Lethrinus_miniatus/Lethrinus_miniatus.dbf
inst/ALA_Shapefile/Lethrinus_miniatus/Lethrinus_miniatus.fix
inst/ALA_Shapefile/Lethrinus_miniatus/Lethrinus_miniatus.prj
inst/ALA_Shapefile/Lethrinus_miniatus/Lethrinus_miniatus.shp
inst/ALA_Shapefile/Lethrinus_miniatus/Lethrinus_miniatus.shx
inst/ALA_Shapefile/Lethrinus_nebulosus/.DS_Store
inst/ALA_Shapefile/Lethrinus_nebulosus/Lethrinus_nebulosus.dbf
inst/ALA_Shapefile/Lethrinus_nebulosus/Lethrinus_nebulosus.fix
inst/ALA_Shapefile/Lethrinus_nebulosus/Lethrinus_nebulosus.prj
inst/ALA_Shapefile/Lethrinus_nebulosus/Lethrinus_nebulosus.shp
inst/ALA_Shapefile/Lethrinus_nebulosus/Lethrinus_nebulosus.shx
inst/ALA_Shapefile/Loxodon_macrorhinus/.DS_Store
inst/ALA_Shapefile/Loxodon_macrorhinus/Loxodon_macrorhinus.dbf
inst/ALA_Shapefile/Loxodon_macrorhinus/Loxodon_macrorhinus.fix
inst/ALA_Shapefile/Loxodon_macrorhinus/Loxodon_macrorhinus.prj
inst/ALA_Shapefile/Loxodon_macrorhinus/Loxodon_macrorhinus.shp
inst/ALA_Shapefile/Loxodon_macrorhinus/Loxodon_macrorhinus.shx
inst/ALA_Shapefile/Lutjanus_argentimaculatus/.DS_Store
inst/ALA_Shapefile/Lutjanus_argentimaculatus/Lutjanus_argentimaculatus.dbf
inst/ALA_Shapefile/Lutjanus_argentimaculatus/Lutjanus_argentimaculatus.fix
inst/ALA_Shapefile/Lutjanus_argentimaculatus/Lutjanus_argentimaculatus.prj
inst/ALA_Shapefile/Lutjanus_argentimaculatus/Lutjanus_argentimaculatus.shp
inst/ALA_Shapefile/Lutjanus_argentimaculatus/Lutjanus_argentimaculatus.shx
inst/ALA_Shapefile/Lutjanus_bohar/.DS_Store
inst/ALA_Shapefile/Lutjanus_bohar/Lutjanus_bohar.dbf
inst/ALA_Shapefile/Lutjanus_bohar/Lutjanus_bohar.fix
inst/ALA_Shapefile/Lutjanus_bohar/Lutjanus_bohar.prj
inst/ALA_Shapefile/Lutjanus_bohar/Lutjanus_bohar.shp
inst/ALA_Shapefile/Lutjanus_bohar/Lutjanus_bohar.shx
inst/ALA_Shapefile/Lutjanus_johnii/.DS_Store
inst/ALA_Shapefile/Lutjanus_johnii/Lutjanus_johnii.dbf
inst/ALA_Shapefile/Lutjanus_johnii/Lutjanus_johnii.fix
inst/ALA_Shapefile/Lutjanus_johnii/Lutjanus_johnii.prj
inst/ALA_Shapefile/Lutjanus_johnii/Lutjanus_johnii.shp
inst/ALA_Shapefile/Lutjanus_johnii/Lutjanus_johnii.shx
inst/ALA_Shapefile/Lutjanus_lutjanus/.DS_Store
inst/ALA_Shapefile/Lutjanus_lutjanus/Lutjanus_lutjanus.dbf
inst/ALA_Shapefile/Lutjanus_lutjanus/Lutjanus_lutjanus.fix
inst/ALA_Shapefile/Lutjanus_lutjanus/Lutjanus_lutjanus.prj
inst/ALA_Shapefile/Lutjanus_lutjanus/Lutjanus_lutjanus.shp
inst/ALA_Shapefile/Lutjanus_lutjanus/Lutjanus_lutjanus.shx
inst/ALA_Shapefile/Lutjanus_sebae/.DS_Store
inst/ALA_Shapefile/Lutjanus_sebae/Lutjanus_sebae.dbf
inst/ALA_Shapefile/Lutjanus_sebae/Lutjanus_sebae.fix
inst/ALA_Shapefile/Lutjanus_sebae/Lutjanus_sebae.prj
inst/ALA_Shapefile/Lutjanus_sebae/Lutjanus_sebae.shp
inst/ALA_Shapefile/Lutjanus_sebae/Lutjanus_sebae.shx
inst/ALA_Shapefile/Maccullochella_mariensis_likely/.DS_Store
inst/ALA_Shapefile/Maccullochella_mariensis_likely/Maccullochella_mariensis_likely.dbf
inst/ALA_Shapefile/Maccullochella_mariensis_likely/Maccullochella_mariensis_likely.fix
inst/ALA_Shapefile/Maccullochella_mariensis_likely/Maccullochella_mariensis_likely.prj
inst/ALA_Shapefile/Maccullochella_mariensis_likely/Maccullochella_mariensis_likely.shp
inst/ALA_Shapefile/Maccullochella_mariensis_likely/Maccullochella_mariensis_likely.shx
inst/ALA_Shapefile/Macquaria_novemaculeata/.DS_Store
inst/ALA_Shapefile/Macquaria_novemaculeata/Macquaria_novemaculeata.dbf
inst/ALA_Shapefile/Macquaria_novemaculeata/Macquaria_novemaculeata.fix
inst/ALA_Shapefile/Macquaria_novemaculeata/Macquaria_novemaculeata.prj
inst/ALA_Shapefile/Macquaria_novemaculeata/Macquaria_novemaculeata.shp
inst/ALA_Shapefile/Macquaria_novemaculeata/Macquaria_novemaculeata.shx
inst/ALA_Shapefile/Meuschenia_freycineti/.DS_Store
inst/ALA_Shapefile/Meuschenia_freycineti/Meuschenia_freycineti.dbf
inst/ALA_Shapefile/Meuschenia_freycineti/Meuschenia_freycineti.fix
inst/ALA_Shapefile/Meuschenia_freycineti/Meuschenia_freycineti.prj
inst/ALA_Shapefile/Meuschenia_freycineti/Meuschenia_freycineti.shp
inst/ALA_Shapefile/Meuschenia_freycineti/Meuschenia_freycineti.shx
inst/ALA_Shapefile/Mobula_alfredi/Mobula_alfredi.dbf
inst/ALA_Shapefile/Mobula_alfredi/Mobula_alfredi.fix
inst/ALA_Shapefile/Mobula_alfredi/Mobula_alfredi.prj
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inst/ALA_Shapefile/Mobula_alfredi/Mobula_alfredi.shx
inst/ALA_Shapefile/Mugil_cephalus/.DS_Store
inst/ALA_Shapefile/Mugil_cephalus/Mugil_cephalus.dbf
inst/ALA_Shapefile/Mugil_cephalus/Mugil_cephalus.fix
inst/ALA_Shapefile/Mugil_cephalus/Mugil_cephalus.prj
inst/ALA_Shapefile/Mugil_cephalus/Mugil_cephalus.shp
inst/ALA_Shapefile/Mugil_cephalus/Mugil_cephalus.shx
inst/ALA_Shapefile/Mustelus_antarcticus/.DS_Store
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inst/ALA_Shapefile/Mustelus_antarcticus/Mustelus_antarcticus.fix
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inst/ALA_Shapefile/Mustelus_antarcticus/Mustelus_antarcticus.shp
inst/ALA_Shapefile/Mustelus_antarcticus/Mustelus_antarcticus.shx
inst/ALA_Shapefile/Myliobatis_australis/.DS_Store
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inst/ALA_Shapefile/Myliobatis_australis/Myliobatis_australis.fix
inst/ALA_Shapefile/Myliobatis_australis/Myliobatis_australis.prj
inst/ALA_Shapefile/Myliobatis_australis/Myliobatis_australis.shp
inst/ALA_Shapefile/Myliobatis_australis/Myliobatis_australis.shx
inst/ALA_Shapefile/Naso_unicornis/.DS_Store
inst/ALA_Shapefile/Naso_unicornis/Naso_unicornis.dbf
inst/ALA_Shapefile/Naso_unicornis/Naso_unicornis.fix
inst/ALA_Shapefile/Naso_unicornis/Naso_unicornis.prj
inst/ALA_Shapefile/Naso_unicornis/Naso_unicornis.shp
inst/ALA_Shapefile/Naso_unicornis/Naso_unicornis.shx
inst/ALA_Shapefile/Negaprion_acutidens/.DS_Store
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inst/ALA_Shapefile/Negaprion_acutidens/Negaprion_acutidens.fix
inst/ALA_Shapefile/Negaprion_acutidens/Negaprion_acutidens.prj
inst/ALA_Shapefile/Negaprion_acutidens/Negaprion_acutidens.shp
inst/ALA_Shapefile/Negaprion_acutidens/Negaprion_acutidens.shx
inst/ALA_Shapefile/Nelusetta_ayraud/.DS_Store
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inst/ALA_Shapefile/Nelusetta_ayraud/Nelusetta_ayraud.fix
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inst/ALA_Shapefile/Nemadactylus_douglasii/.DS_Store
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inst/ALA_Shapefile/Nemadactylus_douglasii/Nemadactylus_douglasii.fix
inst/ALA_Shapefile/Nemadactylus_douglasii/Nemadactylus_douglasii.prj
inst/ALA_Shapefile/Nemadactylus_douglasii/Nemadactylus_douglasii.shp
inst/ALA_Shapefile/Nemadactylus_douglasii/Nemadactylus_douglasii.shx
inst/ALA_Shapefile/Neoarius_graeffei/.DS_Store
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inst/ALA_Shapefile/Neoarius_graeffei/Neoarius_graeffei.fix
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inst/ALA_Shapefile/Neoarius_graeffei/Neoarius_graeffei.shx
inst/ALA_Shapefile/Neoceratodus_forsteri_likely/.DS_Store
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inst/ALA_Shapefile/Neoceratodus_forsteri_likely/Neoceratodus_forsteri_likely.fix
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inst/ALA_Shapefile/Neoceratodus_forsteri_likely/Neoceratodus_forsteri_likely.shp
inst/ALA_Shapefile/Neoceratodus_forsteri_likely/Neoceratodus_forsteri_likely.shx
inst/ALA_Shapefile/Notolabrus_tetricus/.DS_Store
inst/ALA_Shapefile/Notolabrus_tetricus/Notolabrus_tetricus.dbf
inst/ALA_Shapefile/Notolabrus_tetricus/Notolabrus_tetricus.fix
inst/ALA_Shapefile/Notolabrus_tetricus/Notolabrus_tetricus.prj
inst/ALA_Shapefile/Notolabrus_tetricus/Notolabrus_tetricus.shp
inst/ALA_Shapefile/Notolabrus_tetricus/Notolabrus_tetricus.shx
inst/ALA_Shapefile/Notorynchus_cepedianus/.DS_Store
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inst/ALA_Shapefile/Notorynchus_cepedianus/Notorynchus_cepedianus.fix
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inst/ALA_Shapefile/Notorynchus_cepedianus/Notorynchus_cepedianus.shp
inst/ALA_Shapefile/Notorynchus_cepedianus/Notorynchus_cepedianus.shx
inst/ALA_Shapefile/Orectolobus_halei/.DS_Store
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inst/ALA_Shapefile/Orectolobus_halei/Orectolobus_halei.fix
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inst/ALA_Shapefile/Orectolobus_halei/Orectolobus_halei.shp
inst/ALA_Shapefile/Orectolobus_halei/Orectolobus_halei.shx
inst/ALA_Shapefile/Orectolobus_maculatus/.DS_Store
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inst/ALA_Shapefile/Orectolobus_maculatus/Orectolobus_maculatus.fix
inst/ALA_Shapefile/Orectolobus_maculatus/Orectolobus_maculatus.prj
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inst/ALA_Shapefile/Orectolobus_maculatus/Orectolobus_maculatus.shx
inst/ALA_Shapefile/Othos_dentex/.DS_Store
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inst/ALA_Shapefile/Othos_dentex/Othos_dentex.fix
inst/ALA_Shapefile/Othos_dentex/Othos_dentex.prj
inst/ALA_Shapefile/Othos_dentex/Othos_dentex.shp
inst/ALA_Shapefile/Othos_dentex/Othos_dentex.shx
inst/ALA_Shapefile/Pagrus_auratus/.DS_Store
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inst/ALA_Shapefile/Pagrus_auratus/Pagrus_auratus.fix
inst/ALA_Shapefile/Pagrus_auratus/Pagrus_auratus.prj
inst/ALA_Shapefile/Pagrus_auratus/Pagrus_auratus.shp
inst/ALA_Shapefile/Pagrus_auratus/Pagrus_auratus.shx
inst/ALA_Shapefile/Pastinachus_atrus/.DS_Store
inst/ALA_Shapefile/Pastinachus_atrus/Pastinachus_atrus.dbf
inst/ALA_Shapefile/Pastinachus_atrus/Pastinachus_atrus.fix
inst/ALA_Shapefile/Pastinachus_atrus/Pastinachus_atrus.prj
inst/ALA_Shapefile/Pastinachus_atrus/Pastinachus_atrus.shp
inst/ALA_Shapefile/Pastinachus_atrus/Pastinachus_atrus.shx
inst/ALA_Shapefile/Platycephalus_bassensis/.DS_Store
inst/ALA_Shapefile/Platycephalus_bassensis/Platycephalus_bassensis.dbf
inst/ALA_Shapefile/Platycephalus_bassensis/Platycephalus_bassensis.fix
inst/ALA_Shapefile/Platycephalus_bassensis/Platycephalus_bassensis.prj
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inst/ALA_Shapefile/Platycephalus_bassensis/Platycephalus_bassensis.shx
inst/ALA_Shapefile/Platycephalus_caeruleopunctatus/.DS_Store
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inst/ALA_Shapefile/Platycephalus_caeruleopunctatus/Platycephalus_caeruleopunctatus.fix
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inst/ALA_Shapefile/Platycephalus_caeruleopunctatus/Platycephalus_caeruleopunctatus.shp
inst/ALA_Shapefile/Platycephalus_caeruleopunctatus/Platycephalus_caeruleopunctatus.shx
inst/ALA_Shapefile/Platycephalus_fuscus/.DS_Store
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inst/ALA_Shapefile/Platycephalus_fuscus/Platycephalus_fuscus.fix
inst/ALA_Shapefile/Platycephalus_fuscus/Platycephalus_fuscus.prj
inst/ALA_Shapefile/Platycephalus_fuscus/Platycephalus_fuscus.shp
inst/ALA_Shapefile/Platycephalus_fuscus/Platycephalus_fuscus.shx
inst/ALA_Shapefile/Platycephalus_longispinis/.DS_Store
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inst/ALA_Shapefile/Platycephalus_longispinis/Platycephalus_longispinis.fix
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inst/ALA_Shapefile/Platycephalus_longispinis/Platycephalus_longispinis.shp
inst/ALA_Shapefile/Platycephalus_longispinis/Platycephalus_longispinis.shx
inst/ALA_Shapefile/Platycephalus_richardsoni/.DS_Store
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inst/ALA_Shapefile/Platycephalus_richardsoni/Platycephalus_richardsoni.shx
inst/ALA_Shapefile/Platycephalus_speculator/.DS_Store
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inst/ALA_Shapefile/Platycephalus_speculator/Platycephalus_speculator.fix
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inst/ALA_Shapefile/Platycephalus_speculator/Platycephalus_speculator.shx
inst/ALA_Shapefile/Plectropomus_laevis/.DS_Store
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inst/ALA_Shapefile/Plectropomus_laevis/Plectropomus_laevis.fix
inst/ALA_Shapefile/Plectropomus_laevis/Plectropomus_laevis.prj
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inst/ALA_Shapefile/Plectropomus_laevis/Plectropomus_laevis.shx
inst/ALA_Shapefile/Plectropomus_leopardus/.DS_Store
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inst/ALA_Shapefile/Plectropomus_maculatus/.DS_Store
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inst/ALA_Shapefile/Pristiophorus_nudipinnis/.DS_Store
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inst/ALA_Shapefile/Pristiophorus_nudipinnis/Pristiophorus_nudipinnis.fix
inst/ALA_Shapefile/Pristiophorus_nudipinnis/Pristiophorus_nudipinnis.prj
inst/ALA_Shapefile/Pristiophorus_nudipinnis/Pristiophorus_nudipinnis.shp
inst/ALA_Shapefile/Pristiophorus_nudipinnis/Pristiophorus_nudipinnis.shx
inst/ALA_Shapefile/Pristis_microdon/.DS_Store
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inst/ALA_Shapefile/Pristis_microdon/Pristis_microdon.prj
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inst/ALA_Shapefile/Pristis_microdon_likely/.DS_Store
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inst/ALA_Shapefile/Pristis_microdon_likely/Pristis_microdon_likely.prj
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inst/ALA_Shapefile/Pseudocaranx_dentex/.DS_Store
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inst/ALA_Shapefile/Pseudocaranx_dentex/Pseudocaranx_dentex.shx
inst/ALA_Shapefile/Rachycentron_canadum/.DS_Store
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inst/ALA_Shapefile/Rachycentron_canadum/Rachycentron_canadum.shx
inst/ALA_Shapefile/Rhincodon_typus/.DS_Store
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inst/ALA_Shapefile/Rhincodon_typus/Rhincodon_typus.prj
inst/ALA_Shapefile/Rhincodon_typus/Rhincodon_typus.shp
inst/ALA_Shapefile/Rhincodon_typus/Rhincodon_typus.shx
inst/ALA_Shapefile/Rhizoprionodon_taylori/.DS_Store
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inst/ALA_Shapefile/Rhizoprionodon_taylori/Rhizoprionodon_taylori.shp
inst/ALA_Shapefile/Rhizoprionodon_taylori/Rhizoprionodon_taylori.shx
inst/ALA_Shapefile/Rhynchobatus_laevis/.DS_Store
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inst/ALA_Shapefile/Scarus_ghobban/.DS_Store
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inst/ALA_Shapefile/Scomberomorus_commerson/.DS_Store
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inst/ALA_Shapefile/Siganus_doliatus/.DS_Store
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inst/ALA_Shapefile/Sillago_ciliata/.DS_Store
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inst/ALA_Shapefile/Sphyrna_mokarran/.DS_Store
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inst/ALA_Shapefile/Stegostoma_fasciatum/.DS_Store
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inst/ALA_Shapefile/Stegostoma_fasciatum/Stegostoma_fasciatum.shx
inst/ALA_Shapefile/Taeniura_lymma/.DS_Store
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inst/ALA_Shapefile/Thunnus_maccoyii_likely/.DS_Store
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inst/ALA_Shapefile/Thunnus_maccoyii_likely/Thunnus_maccoyii_likely.shp
inst/ALA_Shapefile/Thunnus_maccoyii_likely/Thunnus_maccoyii_likely.shx
inst/ALA_Shapefile/Trachystoma_petardi/.DS_Store
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inst/ALA_Shapefile/Trachystoma_petardi/Trachystoma_petardi.shx
inst/ALA_Shapefile/Triaenodon_obesus/.DS_Store
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inst/ALA_Shapefile/Triaenodon_obesus/Triaenodon_obesus.fix
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inst/ALA_Shapefile/Triaenodon_obesus/Triaenodon_obesus.shp
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man/det_per_receiver_location.Rd
man/det_per_species.Rd
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man/get_expert_distribution_shp_CAAB.Rd
man/grabQC.Rd
man/imos_variables.Rd
man/imos_variables_table.Rd
man/merge.moor.Rd
man/mooringDownload.Rd
man/mooringTable.Rd
man/n_detections.Rd
man/n_receivers.Rd
man/n_species.Rd
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vignettes/.gitignore
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vignettes/images/transmitter_report/transmitter_deployments.png
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vignettes/runQC.Rmd
vignettes/shinyReport_receivers.Rmd
vignettes/shinyReport_transmitters.Rmd
vignettes/style.css
