plotDT: Depth-time plot

In IMOS-AnimalTracking/remora: Rapid Extraction of Marine Observations for Roving Animals

Depth-time plot

Description

Creates an interactive depth-time plot from a sensor dataset from a specified IMOS mooring, with an option to overlay species detection records from tracking dataset from closest receiver

Usage

plotDT(
  moorData,
  moorName,
  dateStart = NULL,
  dateEnd = NULL,
  varName = c("temperature", "vcur", "ucur", "psal"),
  trackingData = NULL,
  speciesID,
  IDtype = "CAAB",
  detStart = NULL,
  detEnd = NULL
)

Arguments

moorData	Dataframe containing the sensor data from a single IMOS mooring.
moorName	Character string specifying mooring name using IMOS ID code.
dateStart	Optional character string of start date of date range of mooring data to plot, as "YYYY-MM-DD"
dateEnd	Optional character string of end date of date range of mooring data to plot, as "YYYY-MM-DD"
varName	Character string of mooring sensor variable of interest. Can be "temperature", "ucur" for meridional (u) velocity, "vcur" for zonal (v) velocity
trackingData	Dataframe containing tag detections data to plot. Takes output from getDistance() function as input. Set as NULL for a base plot with no detections.
speciesID	Character string describing species or tag identifier.
IDtype	Character string describing type of species or tag identifier. Can be CAAB code, tag ID, common name or scientific name. Must match identifier in detections dataset.
detStart	Optional character string of start date of date range of detections data to overlay on depth-time plot.
detEnd	Optional character string of end date of date range of detections data to overlay on depth-time plot.

IMOS-AnimalTracking/remora documentation built on Jan. 29, 2025, 4:38 p.m.