Man pages for IMOS-AnimalTracking/remora
Rapid Extraction of Marine Observations for Roving Animals
| choose_file | Choose a file interactively |
| dataDownload | Download Bluelink environmental data |
| data_with_sst_and_current | ?? |
| det_per_receiver_location | Receiver location summary |
| det_per_species | Detections per species |
| det_per_station | Detections per station |
| det_per_tag | Number of detections per transmitter |
| det_per_tag_location | Number of detections per tag, tag deployment coordinates and... |
| det_species_station | Detections per station per species |
| dot-build_urls | Build urls to pull data environmental data from IMOS THREDDS... |
| dot-extract_var | extract_var |
| dot-pull_env | Pull environmental data from IMOS THREDDS server and save to... |
| extractBlue | Extract and append Bluelink Reanalysis (BRAN) environmental... |
| extractEnv | Extract and append remote sensing environmental data to... |
| extractMoor | Link the QC Detection Dataset to the Sensor Value obtained by... |
| get_data | read acoustic detection data and metadata from IMOS... |
| getDistance | Find closest mooring |
| get_expert_distribution_shp | match species CAAB code with CSIRO expert distribution... |
| get_expert_distribution_shp_CAAB | match species CAAB code with CSIRO expert distribution... |
| getOverlap | Extract number of tag detections that fall within the... |
| grabQC | grab subsets of the QC output |
| imos_variables | Table of all available IMOS variables accessible from... |
| imos_variables_table | ?? |
| merge.moor | Link the QC Detection Dataset to the Sensor Value obtained by... |
| mooringDownload | Download the IMOS Mooring Data for a Single Mooring Site |
| mooringTable | Pull the Latest IMOS Moorings Dataset from the Server |
| n_detections | Number of total detections per transmitter |
| n_receivers | Number of total receivers |
| n_species | Number of total species |
| n_tags | Number of total transmitters |
| plotDT | Depth-time plot |
| plotQC | produce interactive leaflet maps showing the occurrence of... |
| qc | test the validity of individual detections for tags detected... |
| remora-package | 'remora' |
| remoteNCDF | Remotely open BRAN netCDF files |
| runQC | run IMOS-ATF acoustic detections quality control process |
| sei | Station Efficiency Index |
| shinyReport | Render Shiny report |
| shortest_dist2 | find least-cost distance between two locations |
| TownsvilleReefQC | Quality-controlled bull shark detections (5 individuals,... |
| windDir | Calculate wind direction |
| windSpd | Calculate wind speed |
| writeQC | write a QCsummary.csv file and/or QC processed '.csv' files... |
| write_summary | extract summary statistics by tag & write to text file |
