Man pages for INBO-Natura2000/n2kanalysis
Generic Functions to Analyse Data from the 'Natura 2000' Monitoring
| combine | Combine multiple n2k objects |
| delete_model | Delete an 'n2kModel' object |
| display | Display a message. |
| extract | Extract the relevant coefficients |
| fit_every_model | Fit the model to the analysis files |
| fit_model | Fit an 'n2kModel' object |
| get_analysis_date | Get the analysis date of an 'n2kModel' object |
| get_analysis_version | Get an analysis version |
| get_anomaly | Get the anomalies from a model |
| get_data | Get the data of an 'n2kModel' object |
| get_datafield_id | Get the data field id |
| get_file_fingerprint | Get the file fingerprint of an 'n2kModel' object |
| get_formula | Get the formula of an 'n2kModel' object |
| get_location_group_id | Get the location group id of an 'n2kModel' object |
| get_model | Get the model of a 'n2kModel' object |
| get_model_parameter | Add the model parameters from a model |
| get_model_type | Get the model type of an 'n2kModel' object |
| get_parents | Get the object of the parent analyses of an 'n2kModel' object |
| get_result | Add the results from an analysis |
| get_scheme_id | Get the 'scheme_id' of an 'n2kModel' object |
| get_seed | Get the seed of an 'n2kModel' object |
| get_species_group_id | Get the species group id of an 'n2kModel' object |
| get_status_fingerprint | Get the status fingerprint of an 'n2kModel' object |
| inla_inverse | Calculate the mean and 95\ marginal |
| make_a | Convert an 'Spde' object to a A object |
| manifest_yaml_to_bash | Convert a manifest yaml file into a bash script |
| mark_obsolete_dataset | Find and mark obsolete datasets |
| moving_average | Calculate moving trend coefficients |
| moving_difference | Calculate coefficients for a moving difference |
| moving_trend | Calculate moving trend coefficients |
| n2k_aggregate | Create an 'n2kAggregate' object |
| n2kAggregate-class | The 'n2kAggregate' class |
| n2kAnalysisMetadata-class | The 'n2kAnalysisMetadata' class |
| n2kAnalysisVersion-class | The 'n2kAnalysisVersion' class |
| n2kAnomaly-class | The 'n2kAnomaly' class |
| n2k_composite | Create an 'n2kComposite' object |
| n2kComposite-class | The 'n2kComposite' class |
| n2kContrast-class | The 'n2kContrast' class |
| n2k_hurdle_imputed | Create an 'n2kHurdleImputed' object |
| n2kHurdleImputed-class | The 'n2kHurdleImputed' class |
| n2k_import | Create an 'n2kImport' object |
| n2kImport-class | The 'n2kImport' class |
| n2k_inla | Create an 'n2kInla' object |
| n2kInla-class | The 'n2kInla' class |
| n2k_inla_comparison | Create an 'n2kInlaComparison' object |
| n2kInlaComparison-class | The 'n2kInlaComparison' class |
| n2k_manifest | Create an 'n2kManifest' object |
| n2kManifest-class | The 'n2kManifest' class |
| n2kModel-class | The 'n2kModel' class |
| n2k_model_imputed | Create an 'n2kModelImputed' object |
| n2kModelImputed-class | The 'n2kModelImputed' class |
| n2kParameter-class | The 'n2kParameter' class |
| n2kResult-class | The 'n2kResult' class |
| n2k_spde | Create an 'n2kSpde' object |
| n2kSpde-class | The 'n2kSpde' class |
| order_manifest | Convert a manifest in vector of analysis fingerprints |
| parent_status | Get the parent status of an 'n2kModel' |
| parent_status_change | Overwrite the status of an 'n2kAnalysisMetadata' |
| read_manifest | Read a 'n2kManifest' object |
| read_model | Read an 'n2kModel' object |
| read_result | Read an 'n2kResult' object |
| reexports | Objects exported from other packages |
| result_estimate | Aggregate all results estimates in a single dataframe |
| result_metadata | Aggregate all results meta data in a single dataframe |
| select_factor_count_strictly_positive | Select data based on the number of presences per category |
| select_factor_threshold | Select the observations based on the average of a factor |
| select_observed_range | Limit the observation to the range in which the species is... |
| session_package | Convert a 'sessionInfo()' to a data.frame of packages |
| spde | Create an 'Spde' object |
| spde2matern | Convert an 'Spde' object to a 'matern' object |
| spde2mesh | Convert an 'Spde' object to a mesh object |
| Spde-class | The 'spde' class |
| status | Get the status of an 'n2kModel' |
| status_change | Overwrite the status of an 'n2kAnalysisMetadata' |
| store_manifest | Store an 'n2kManifest' object |
| store_manifest_yaml | Store a Docker configuration |
| store_model | Store an 'n2kModel' object |
| union | Make a union of 'AnalysisVersions' |
| validObject | Get the validity of objects in files |
