| cleanGs3 | Clean output files |
| crossValFold | Single fold of a cross-validation |
| crossValRepWithGs3 | Replicated K-fold cross-validation |
| crossValWithGs3 | K-fold cross-validation |
| execGs3 | Execute GS3 |
| getDefaultConfig | Default configuration |
| getPartitionGenos | Partition genotypes for cross-validation |
| isValidConfig | Check configuration |
| isValidData | Check data |
| isValidGenos | Check genotypes |
| vcs2mcmc | Load GS3 results |
| writeConfigForGs3 | Write configuration |
| writeDataForGs3 | Write data |
| writeGenosForGs3 | Write genotypes |
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