vcs2mcmc: Load GS3 results
In INRA/rgs3: R package wrapping the GS3 program for genomic selection

Description Usage Arguments Value Author(s) See Also Examples

Read the file containing the variance components' samples into a mcmc.list object.

1	vcs2mcmc(config, afs = NULL)

`config`	list containing the configuration for GS3
`afs`	vector of allele frequencies (of all the SNPs which genotypes were provided, and only them); used to compute the variance of additive (and dominance) genotypic values from the variance of additive (and dominance) SNP effects (see Vitezica et al, 2013), and to compute narrow-sense heritability

mcmc.list

Timothee Flutre

execGs3

## Not run: vcs <- vcs2mcmc(config$vcs.file)
summary(vcs)
coda::effectiveSize(vcs)
genos <- as.matrix(read.table(genos.file))
afs <- colMeans(genos) / 2
vcs <- vcs2mcmc(config$vcs.file, afs)
summary(vcs)
## End(Not run)