Man pages for ISA-tools/Risa
Converting experimental metadata from ISA-tab into Bioconductor data structures
| AssayTab-class | Class '"AssayTab"', a class for maintaing the information of... |
| getAnnotatedDataFrameAssay | Retrieves an AnnotatedDataFrameAssay. |
| getAssayRawDataFilenames-methods | ~~ Methods for Function 'getAssayRawDataFilenames' in Package... |
| getExpressionSet | Retrieves an ExpressionSet for a DNA microarray assay. |
| getMIAMEMetadata | Retrieves the MIAME information about a microarray experiment |
| getMicroarrayAssayFilenames | Listing filenames of microarray-based asssay from an ISAtab... |
| getMSAssayFilenames | Retrieves a vector with the assay filenames corresponding to... |
| getRawDataFilenames-methods | ~~ Methods for Function 'getRawDataFilenames' in Package... |
| getStudyFilename | Retrieves the study filename to which an assay.filename... |
| ISAtab-class | Class '"ISATab"', a class for maintaing ISATab information |
| isMicroarrayAssay | Determines if an assay is microarray-based or not. |
| isMSAssay | Indicates if an assay filename corresponds to a mass... |
| processAssayXcmsSet | Build an xcmsSet object given a mass spectrometry assay and... |
| processAssayXcmsSet.1factor | Build an xcmsSet object given a mass spectrometry assay and... |
| readISAtab | Reads an ISAtab dataset into an R object. |
| Risa-package | Risa package overview |
| suggestBiocPackage | Suggest Bioconductor pacakges |
| updateAssayMetadata | Update metadata into the assay file |
| write.assay.file | Write an Assay File from the ISA-Tab dataset |
| write.investigation.file | Writes the Investigation File of an ISA-Tab dataset |
| write.isatab | Write an ISA-Tab dataset |
| write.study.file | Write a Study File of an ISA-Tab dataset |
