isMicroarrayAssay: Determines if an assay is microarray-based or not.
In ISA-tools/Risa: Converting experimental metadata from ISA-tab into Bioconductor data structures
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Retrieves a boolean value indicating wether the assay filename given as parameter corresponds to a microarray-based assay or not.
Usage
1
isMicroarrayAssay(isa, assay.filename)
Arguments
isa
An object of the ISAtab-class.
assay.filename
A string indicating the name of an assay file. It must correspond to a microarray-based assay for the function to return a valid value.
Value
Retrieves a boolean value.
Author(s)
Alejandra Gonzalez-Beltran
See Also
Examples
1
2
3
4
5
6
data.dir <- system.file("extdata", package="Risa")
isazip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
isa <- readISAtab(zipfile = isazip, path = file.path(data.dir,"ARMSTRONG_ISA"), verbose =TRUE)
assay.filename <- isa@assay.filenames[[1]]
isMicroarrayAssay(isa, assay.filename)
ISA-tools/Risa documentation built on May 8, 2019, 1:25 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Retrieves a boolean value indicating wether the assay filename given as parameter corresponds to a microarray-based assay or not.
Usage
1 | isMicroarrayAssay(isa, assay.filename)
|
Arguments
isa |
An object of the |
assay.filename |
A string indicating the name of an assay file. It must correspond to a microarray-based assay for the function to return a valid value. |
Value
Retrieves a boolean value.
Author(s)
Alejandra Gonzalez-Beltran
See Also
Examples
1 2 3 4 5 6 | data.dir <- system.file("extdata", package="Risa")
isazip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
isa <- readISAtab(zipfile = isazip, path = file.path(data.dir,"ARMSTRONG_ISA"), verbose =TRUE)
assay.filename <- isa@assay.filenames[[1]]
isMicroarrayAssay(isa, assay.filename)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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