write.assay.file: Write an Assay File from the ISA-Tab dataset

In ISA-tools/Risa: Converting experimental metadata from ISA-tab into Bioconductor data structures

Description

write.assay.file writes a specific assay file from the ISA-tab dataset into disk.

Usage

write.assay.file(isa, assay.filename, path = getwd())

Arguments

isa	the ISA-Tab object (as retrieved by the readISAtab function )
assay.filename	the name of the assay file to be written to disk
path	the output path in which the study file is going to be written, by default is the working directory

Author(s)

Alejandra Gonzalez-Beltran / Maintainer: Alejandra Gonzalez-Beltran, ISA Team <[e-mail]>

See Also

write.ISAtab,write.investigation.file, write.study.file, readISAtab

Examples

    ### Example of writing the study file of faahKO ISA-Tab dataset into the temp directory
    faahkoISA <- readISAtab(find.package("faahKO"))
    temp = tempdir()
    write.assay.file(faahkoISA, faahkoISA["assay.filenames"][[1]], temp)

ISA-tools/Risa documentation built on May 8, 2019, 1:25 p.m.