read_samplesheet: Load data from happyCompare samplesheets

Description Usage Arguments Value Examples

View source: R/io.R

Description

Load hap.py results into a happy_compare object using happyR.

Usage

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read_samplesheet(samplesheet_path, lazy = TRUE)

Arguments

samplesheet_path

Path to a happyCompare samplesheet. Required fields: Group.Id, Sample.Id, Replicate.Id, happy_prefix.

lazy

Do not load larger hap.py results until needed. Default: TRUE.

Value

A happy_compare object, with the following fields:

Examples

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## Not run: 
happy_compare <- read_samplesheet(samplesheet_path = 'happyCompare_samplesheet.csv')

## End(Not run)

Illumina/happyCompare documentation built on Sept. 30, 2017, 7:07 p.m.