read_samplesheet: Load data from happyCompare samplesheets

In Illumina/happyCompare: Reporting toolbox for hap.py output

Description

Load hap.py results into a happy_compare object using happyR.

Usage

read_samplesheet(samplesheet_path, lazy = TRUE)

Arguments

samplesheet_path	Path to a happyCompare samplesheet. Required fields: Group.Id, Sample.Id, Replicate.Id, happy_prefix.
lazy	Do not load larger hap.py results until needed. Default: TRUE.

Value

A happy_compare object, with the following fields:

• samplesheet: the original samplesheet, stored as a data.frame.

• happy_results: a happy_result_list object that contains individual happy_result objects as defined in happyR.

• ids: a vector of unique identifiers for each result.

Examples

## Not run: 
happy_compare <- read_samplesheet(samplesheet_path = 'happyCompare_samplesheet.csv')

## End(Not run)

Illumina/happyCompare documentation built on July 12, 2019, 7:57 p.m.