read_samplesheet_: Load data from happyCompare samplesheets

Description Usage Arguments Value Examples

View source: R/io.R

Description

Load hap.py results, build metrics and custom metadata into a happy_compare object using happyR.

Usage

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read_samplesheet_(samplesheet, lazy = TRUE)

Arguments

samplesheet

A happyCompare samplesheet (data.frame). Required fields: Group.Id, Sample.Id, Replicate.Id, happy_prefix. Optional fields: build_metrics. Also supports additional metadata fields supplied as extra columns.

lazy

Do not load larger hap.py results until needed. Default: TRUE.

Value

A happy_compare object, with the following fields:

Examples

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## Not run: 
happy_compare <- read_samplesheet(samplesheet_path = 'happyCompare_samplesheet.csv')

## End(Not run)

Illumina/happyCompare documentation built on Sept. 30, 2017, 7:07 p.m.