read_samplesheet: Load hap.py results from a samplesheet csv

In Illumina/happyR: Load hap.py results into R

Description

Load multiple hap.py results into a happy_samplesheet object starting from a samplesheet csv.

Usage

read_samplesheet(samplesheet_path, lazy = TRUE)

Arguments

samplesheet_path	Path to samplesheet.csv. Required fields: replicate_id, happy_prefix.
lazy	Do not load larger hap.py results until needed. Default: TRUE.

Value

A happy_samplesheet object, with the following fields:

• samplesheet: the original samplesheet, stored as a data.frame.

• results: a happy_result_list that contains individual happy_result objects.

Examples

## Not run: 
## example happyr_samplesheet.csv
# group_id,replicate_id,happy_prefix
# PCR-Free,NA12878-I30,NA12878-I30_S1
# PCR-Free,NA12878-I33,NA12878-I33_S1
# Nano,NA12878-R1,NA12878-R1_S1
# Nano,NA12878-R2,NA12878-R2_S1

hap_samplesheet <- read_samplesheet(samplesheet_path = 'happyr_samplesheet.csv')

## End(Not run)

Illumina/happyR documentation built on July 12, 2019, 7:57 p.m.