read_samplesheet_: Load hap.py results from a samplesheet dataframe

In Illumina/happyR: Load hap.py results into R

Description

Load multiple hap.py results into a happy_samplesheet object starting from a samplesheet dataframe.

Usage

read_samplesheet_(samplesheet, lazy = TRUE)

Arguments

samplesheet	A happyR samplesheet (data.frame). Required fields: replicate_id, happy_prefix.
lazy	Do not load larger hap.py results until needed. Default: TRUE.

Value

A happy_samplesheet object, with the following fields:

• samplesheet: the original samplesheet, stored as a data.frame.

• results: a happy_result_list that contains individual happy_result objects.

Examples

## Not run: 
samplesheet_df <- tibble::tribble(
  ~group_id, ~replicate_id, ~happy_prefix,
  "PCR-Free", "NA12878-I30", "NA12878-I30_S1",
  "PCR-Free", "NA12878-I33", "NA12878-I33_S1",
  "Nano", "NA12878-R1", "NA12878-R1_S1",
  "Nano", "NA12878-R2", "NA12878-R2_S1"
)
hap_samplesheet <- read_samplesheet_(samplesheet = samplesheet_df)

## End(Not run)

Illumina/happyR documentation built on July 12, 2019, 7:57 p.m.