adjustmentBaalPlot: Method adjustmentBaalPlot
In InesdeSantiago/BaalChIP: BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Produces a density plot of the distribution of allelic ratios (REF/TOTAL) before and after BaalChIP adjustment for RM and RAF biases.
Usage
1
2
3
4
adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
## S4 method for signature 'BaalChIP'
adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
Arguments
.Object
An object of the BaalChIP class.
col
A character vector indicating the colours for the density plot ( default is c( 'green3','gray50') ).
Value
A plot
Author(s)
Ines de Santiago
See Also
Examples
1
2
3
data('BaalObject')
adjustmentBaalPlot(BaalObject)
adjustmentBaalPlot(BaalObject, col=c('blue','pink'))
InesdeSantiago/BaalChIP documentation built on March 4, 2021, 12:54 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
Produces a density plot of the distribution of allelic ratios (REF/TOTAL) before and after BaalChIP adjustment for RM and RAF biases.
Usage
1 2 3 4 | adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
## S4 method for signature 'BaalChIP'
adjustmentBaalPlot(.Object, col = c("green3", "gray50"))
|
Arguments
.Object |
An object of the |
col |
A character vector indicating the colours for the density plot ( default is c( 'green3','gray50') ). |
Value
A plot
Author(s)
Ines de Santiago
See Also
Examples
1 2 3 | data('BaalObject')
adjustmentBaalPlot(BaalObject)
adjustmentBaalPlot(BaalObject, col=c('blue','pink'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.