myDNAScreenDB: Overlaps myDNA genotypes with SNP-trait database of interest

In IngaPa/myDNAS: myDNA: R package to analyze personal genotypes

Description

Overlaps myDNA genotypes with SNP-trait database of interest

Usage

myDNAScreenDB(myDNA, database = "ebicat37", trait = "all")

Arguments

myDNA	(data.frame) analyzed genotypes, an output of importDNA function
database	(character) info database which stores info about genotyping OPTIONS: "ebicat37","ebicat38", "CurrentGwascat"
trait	(character) "all". If all, your genotype profiles are overlapped with full GWAS Catalog. Diseases/Traits of interest can be selected, for example "Schizophrenia". NOTE! if currentGWAS option used then input myDNA needs to be liftovered to hg38

Details

This function identifies overlap between my genotypes (myDNA object) and database which stores info about SNP-trait associations. Currently, GWASCatalog (hg19,hg38 as ebicat37,ebicat38, and makeCurrentGWASC). However, in the future it will use info from SNPedia as well.#'

Author(s)

Inga Patarcic

Examples

## Not run: 
myScreenDNA <- myDNAScreenDB(myDNA = myDNA,
database="ebicat37" )

## End(Not run)

IngaPa/myDNAS documentation built on Dec. 18, 2019, 2:31 a.m.