Files in IoannisVardaxis/MACPET
Model based analysis for paired-end data

DESCRIPTION
NAMESPACE
R/ALLData.R R/AllClasses.R R/AnalysisStatistics.R R/ConvertToPE_BAM.R R/ConvertToPSelf-methods.R R/GetShortestPath-methods.R R/GetSignInteractions-methods.R R/InputChecks.R R/MACPETUlt.R R/MACPET_pkg.R R/PeaksToGRanges-methods.R R/PeaksToNarrowPeak-methods.R R/RcppExports.R R/Stage_0_FilteringLinkersFunctions.R R/Stage_1_MappingFunctions.R R/Stage_2_PETClassificationFunctions.R R/Stage_3_PeakFinderFunctions.R R/Stage_4_InteractionsFunctions.R R/TagsToGInteractions-methods.R R/exportPeaks-methods.R R/plot-methods.R R/summary-methods.R
R/sysdata.rda
inst/CITATION
inst/NEWS
inst/REFERENCES.bib
inst/extdata/.Rapp.history
inst/extdata/MACPET_GenomeMapData.rda
inst/extdata/MACPET_pinterData.rda
inst/extdata/MACPET_pintraData.rda
inst/extdata/MACPET_pselfData.rda
inst/extdata/MACPET_psfitData.rda
inst/extdata/SampleChIAPETData.bam
inst/extdata/SampleChIAPETDataRead_1.bam
inst/extdata/SampleChIAPETDataRead_2.bam
inst/include/MACPET.h
inst/include/MACPET_RcppExports.h
man/AnalysisStatistics.Rd man/ConvertToPE_BAM.Rd man/ConvertToPSelf.Rd man/GenomeMap-class.Rd man/GetShortestPath.Rd man/GetSignInteractions.Rd man/MACPET.Rd man/MACPETUlt.Rd man/MACPET_GenomeMapData.rda.Rd man/MACPET_pinterData.rda.Rd man/MACPET_pintraData.rda.Rd man/MACPET_pselfData.rda.Rd man/MACPET_psfitData.rda.Rd man/PInter-class.Rd man/PIntra-class.Rd man/PSFit-class.Rd man/PSelf-class.Rd man/PeaksToGRanges.Rd man/PeaksToNarrowPeak.Rd man/SampleChIAPETData.bam.Rd man/SampleChIAPETDataRead_1.bam.Rd man/SampleChIAPETDataRead_2.bam.Rd man/TagsToGInteractions.Rd man/exportPeaks.Rd man/plot.Rd man/summary.Rd
src/RcppExports.cpp
src/Stage_0_FastqFilteringSubFunctions.cpp
src/Stage_3_PeakFinderSubFunctions.cpp
src/Stage_4_InteractionsSubFunctions.cpp
vignettes/MACPET.R vignettes/MACPET.Rmd vignettes/MACPET.pdf
IoannisVardaxis/MACPET documentation built on Aug. 11, 2018, 11 a.m.