plot_diet_species: Plot diet

In Irstea/escroc: EscrocR: a R package implementing the models ESCROC and EscroPath

Plot diet

Description

Plot the diet composition of asked species

Usage

plot_diet_species(mydata, myres, spec_names)

Arguments

mydata	a list as returned by function prepare_data
myres	a fit as returned by fit_escroc
spec_names	a character or vector list containing the species names to be plotted

Value

a list of the same length as spec_names with a ggplot

Examples

#importing data
data(signature_data)
data(prior_diet_matrix)
data(LOQ)
data(prior_signature_data)
prior_delta <- data.frame(tracer=c("X15N","X13C"),mean=c(3,0),sd=c(1,1))

#check that everything is ok
mydata <- prepare_data(prior_diet_matrix,signature_data,
LOQ,prior_signature_data,prior_delta)

#build the model
mymodel <- building_model(mydata)

#fit the model
myresults <- fit_escroc(mydata, mymodel)

#plot diet
print(plot_diet_species(mydata, myresults, "Sole"))

Irstea/escroc documentation built on June 18, 2022, 11:22 p.m.